Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04340 ATGGATTTATATTTTGTAAACCCTCATCCTAATCCCAAATTTGGTTACTCTACTCATATGAACTATCATGTTCCTTCTTCCTCCTCTAAATCCTCTAATGAGTTTATACTATCTGAATATCTCATGCTTGATGATTTTTGTATTGATCAAACATACCATGATCAAGAATCTAGGTCACAAAGTATTGAATCATTAGAGAAAGTAACCTTTAGTGATGCTAATCAAGAGTTCAATGATGCAACCTCTAACAACAATAACATAAAGTACAAAAATGGGATTAAAGGAAAAAAGGGAGAAGTGGGGCCAAAGATAGCATTTAGAACAAAATCAGAAATTGAGATTATGGATGATGGATACAAATGGAGGAAGTATGGAAAGAAGTCTGTGAAGAACAATCACAACCTAAGGAATTACTACAAATGTTCAAGTGTTGGATGCAATGTGAAGAAAAGAGTGGAAAGAGATAGAGATGACTCAAGCTATGTGATAACAACTTATGAAGGTGTTCACAGCCATGACATTCCGTTTACCTCCTACTGCAGCCAAATCTCTTTTCAATATTCTGATGCATAA 573 0.3438 MDLYFVNPHPNPKFGYSTHMNYHVPSSSSKSSNEFILSEYLMLDDFCIDQTYHDQESRSQSIESLEKVTFSDANQEFNDATSNNNNIKYKNGIKGKKGEVGPKIAFRTKSEIEIMDDGYKWRKYGKKSVKNNHNLRNYYKCSSVGCNVKKRVERDRDDSSYVITTYEGVHSHDIPFTSYCSQISFQYSDA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04340 190 Gene3D WRKY domain 100 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g04340 190 FunFam WRKY transcription factor 57 101 175 - -
Vivi5g04340 190 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 177 IPR044810 GO:0003700
Vivi5g04340 190 SMART WRKY_cls 115 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g04340 190 Pfam WRKY DNA -binding domain 116 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g04340 190 ProSiteProfiles WRKY domain profile. 110 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g04340 190 SUPERFAMILY WRKY DNA-binding domain 107 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04340 Vivi-Chr5 140908553 140911398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04340 6 187 WRKY Transcription Factor Family AT5G64810 42.935 1.41e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g04340 WRKY 2.1e-21 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04340 5 140908553 140911398 Vivi5g04340 5 140908553 140911398 ECH