Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04337 ATGGAGAATATTTCATTCATCAGAGGGTTTCCTGATCAGGAAATAATGGAGGATCCTTCTTTCTGTCTTCATCAATGGAATTTAAACTCTATTGATGAGACTAACTCACTGCCAATAGCTTCTGCTTTTGGAGACACTTTGCAACATCATTCATATGTTTATCCAAACTTCAACCTCAGAGCTTCGGTTGAAACTGATCAGACGCCAGAGACTCAATTTGTTTCGTACCAGAACCTTCTTTCGTATGTCGATTCAAATCATTTTAATCAGCTGGGATTAGTGAAGCCTAAGGATGAGAGTGTTTGTCCTCGAAACAATAACTCAATTTCTGACGCGGTCTCTCAAGGAATCATGGAGGCTCAAAGGATATCGACACGTCCTAAAGTCACTCTACCTCAGGACCATATAATAGCGGAGAGAAAGCGGCGAGAGAAGCTCAGCCAGCGCTTCATTGCTCTTTCTGCGCTTGTTCCCGGACTACAAAAGATGGACAAAGTTACTGTTCTTGGAGATGCTATCAAGTACTTGAAGAAACTGCAAGAGAAGGTGAAGGCTCTTGAGGAGGAACAGAACATGAAGAAAAACGTAGAATATGTGGTGGTTGTGAAGAAATCTCAACTAAGCAATGACGTTGAGAATTCTTCTGCGGAATCTGGTGGTCTCTTCAACGAGGAACTGCCAGAAATTGAAGCAAGGTTTTGTGATCGAAATGTACTCATAAGAATTCACTGTGAGAAAAGCAAAGGAGCTTTGGAAAAAACAATCCATGAAATTGAGAAACTGCGTCTAAAAGTCATCAATAGCTGTGTCATGACATTTGGGAGCTGCGCACTTGATATAACAGTTATTGCTCAGATGGATATGGAATTCTGCACGACAGTGAAGGATCTTGTGACAAACCTACGCTCCGCTTTTGCATCGTTCATCTGA 930 0.4161 MENISFIRGFPDQEIMEDPSFCLHQWNLNSIDETNSLPIASAFGDTLQHHSYVYPNFNLRASVETDQTPETQFVSYQNLLSYVDSNHFNQLGLVKPKDESVCPRNNNSISDAVSQGIMEAQRISTRPKVTLPQDHIIAERKRREKLSQRFIALSALVPGLQKMDKVTVLGDAIKYLKKLQEKVKALEEEQNMKKNVEYVVVVKKSQLSNDVENSSAESGGLFNEELPEIEARFCDRNVLIRIHCEKSKGALEKTIHEIEKLRLKVINSCVMTFGSCALDITVIAQMDMEFCTTVKDLVTNLRSAFASFI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04337 309 Gene3D - 124 196 IPR036638 GO:0046983
Vivi5g04337 309 Coils Coil 169 196 - -
Vivi5g04337 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 206 IPR036638 GO:0046983
Vivi5g04337 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Vivi5g04337 309 SMART finulus 136 185 IPR011598 GO:0046983
Vivi5g04337 309 CDD bHLH_AtNAI1_like 131 204 - -
Vivi5g04337 309 PANTHER BHLH TRANSCRIPTION FACTOR 47 306 - -
Vivi5g04337 309 Pfam Helix-loop-helix DNA-binding domain 134 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04337 Vivi-Chr5 140861710 140863519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04337 133 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.667 1.99e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g04337 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04337 - - vun:114179595 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04337 5 140861710 140863519 Vivi5g04337 5 140861710 140863519 ECH
Vivi5g04337 5 140861710 140863519 Vivi5g04337 5 140861710 140863519 PCT