Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04328 ATGATGGGATTCTCTAACCAATTCAAAGATTCATTTCACCATGGTCTTATTGCTGGCTATTGTTTCACTGCAACTTTTATCATTGTTTTTTATATTTCCTATTGTCTACCCACACAACTTATGAAGAAGAGAAAAAATAAGAACCTTCAACGTAAGAAAACAAGAGAGATGCGCAAATTACCTTATCAGAACGCAAAACAGAAACTAAAGAAAGTTGGACAAAAAGACAAAATGTTGCATGTGGGGTTGTTAGAGCTGAAAAGAATACAGATCAATAAAGTTGGAAGACTAAGTTATAGAATAAACTTCACAAAAGTCTGTCATGCAACAAAAGACTTTAGCAAGGACAATGTCATTGGGGTAGGAGTGATTGGAATAATGTACAAGGCAACACTTCCCAACGGTTGTTTCTTGGCAGTTAAGAGACTACATGATTCACAATTATCTATTAAAAGGTTCGAGTTAGAAATAATGCTATCGGGACAATACAGTCACAGAAACATAGTTCCCTTGATTGGTTTTTGCATAGAAGAACAAAATGAAAGAATTTTGGTGTATCAGTACATGCCAAATGGAAAACTTTCTGATTGGTTGAATGATGATACTACAAAACTAGGATGGTCAAGAGTTATCAAAATTGCACTTGGAGTAGCAAGAGGTTTATGTTGCTTCCATCATGGCTTGCATATGGTTCACCTTAGAATAAGTTCCGAGTGTATCTTGTTAGGGAACAGTTTTGAGCCAAAAATATCCAATGTTGGAGCGGCTATTATGAATAATGATGTGAACAAAAACATAGGACTTATGAAAAAGGATGTTTATGACTTTGGTTGTTTGCTTTTTGAGTTGATTAAGGGGAAGAAAATTGGCCAAATAAGTGATGGTTTAAGCAATATTACTAGAGTTCCTTTTACGACATACCCGAATCTGAATCCTATGAACTTATTGGAGGACTATTCTAGTTTCTATGATGTAATGGATGAACCTATAAACAAGAAAGAATTTGAAGATGAGGTGTCTGCTCTTCTTAGAATTGCCTGTGATTGTGTTCATCCTCTCCTTGAACAAAGACCTACTATGCTTGAGGTGTATAGCAAGATGGGTAACATATGGGAAAGAGATGAGATTTGTGAAGATCTTGACATTGTTACTTCTACTACAAGTAGAGACACCAATAGTTTTGGTAGTGAGTGA 1194 0.3543 MMGFSNQFKDSFHHGLIAGYCFTATFIIVFYISYCLPTQLMKKRKNKNLQRKKTREMRKLPYQNAKQKLKKVGQKDKMLHVGLLELKRIQINKVGRLSYRINFTKVCHATKDFSKDNVIGVGVIGIMYKATLPNGCFLAVKRLHDSQLSIKRFELEIMLSGQYSHRNIVPLIGFCIEEQNERILVYQYMPNGKLSDWLNDDTTKLGWSRVIKIALGVARGLCCFHHGLHMVHLRISSECILLGNSFEPKISNVGAAIMNNDVNKNIGLMKKDVYDFGCLLFELIKGKKIGQISDGLSNITRVPFTTYPNLNPMNLLEDYSSFYDVMDEPINKKEFEDEVSALLRIACDCVHPLLEQRPTMLEVYSKMGNIWERDEICEDLDIVTSTTSRDTNSFGSE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04328 397 Gene3D Transferase(Phosphotransferase) domain 1 269 382 - -
Vivi5g04328 397 ProSiteProfiles Protein kinase domain profile. 113 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04328 397 Gene3D Phosphorylase Kinase; domain 1 74 188 - -
Vivi5g04328 397 Gene3D Transferase(Phosphotransferase) domain 1 189 268 - -
Vivi5g04328 397 Pfam Protein tyrosine and serine/threonine kinase 116 257 IPR001245 GO:0004672|GO:0006468
Vivi5g04328 397 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 89 383 - -
Vivi5g04328 397 SUPERFAMILY Protein kinase-like (PK-like) 97 365 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04328 Vivi-Chr5 140745067 140749342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04328 74 381 Receptor kinase-like Gene Family AT1G27190 31.395 7.66e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi5g04328 PK_Tyr_Ser-Thr 2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04328 - - tpra:123911597 484.182