Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04327 ATGATGGAATTCTCTAATCAATTCAAACATTCATTTCACCAAGGTCTTATTGCTGGCTTTTTTTTCACTGCAACTTTTACCATTGTTTTTTACATTTCCTATTGTCTACCCACACGACTTATGAAAAAGAGAAAAAATAAGAACCTTCAACGTAAGAAAACAAGAGAGATGCGCAAATTACCTGATCAGAATGCAAAACAGAAACTAAAAAAAGTTGGACAAAAAGACAGAATAATGTTGCCTGTGGAATTGCTAGAGAAAAGAATACAGATCAATAAAGTTGGACGATTGAGTTATAGAATAAACTTCACAAAATTGTGTCATGCAACAAAAGACTTTAGCAAGGACAATGTCATTGGGGTAGGAGTGACTGGAATAATGTACAAGGCAACACTTCAAAACGGTCGTTTCTTGGCAGTTAAGAGACTACATGATTCACAATTATCTATTAAAAGGTTCGAGTTAGAAATAATGCTATCGGGACAATACAGTCACAGAAACATAGTTCCTTTGATTGGTTTTTGCTTAGAAGAACAAAATGAAAGAATTTTGGTGTATCAGTACATGCCAAATGGAAAACTTTCTGATTGGTTGAATGATGATACTACAAAACTAGGATGGTCAAGACTTATCAAAATTGCACTTGGTGTAGCAAGAGGTTTATGTTGCTTCCATCATAGCTTGCATTTGGTTCATCTTAGAATAAGTTCCGAGTGTATTTTGTTAGGGAACAATTTTGAGCCAAAAATATCCAATGTTGGAGTGGCTAGTATGAATAATGATGTGGACAAAAACATAGGACTTGAGAAGAAGGATGTTTGTGACTTTGGTTGTTTGCTTTTTGAGTTGATTAAGGGGAAGAAATTTGGCCCAATAAGTAATGGTTTAAACAATACTAGTGTACCTTTTTCGACATACACGTATCCGAATCCTATGAACCTATTGGAGGACCACTCTGGGTTCTATGATGTAATGGATGAATCTTTAAACAAGATAGAATTTGAAGATGAGGTGTCTGCTCTTCTTAGAATTGCATGTGATTGTGTTCATCCTCGCCCCGAACAAAGACCTACTATGCTTGAGGTGTATAGCAAGATGGGTAACATATGGGAGAAAGATGAGATTTGTGAAGATTTTGACATTGTTACTTCTACAAGTAGAGACACCAATAGTTTTGGTAGTGAGTGA 1188 0.3552 MMEFSNQFKHSFHQGLIAGFFFTATFTIVFYISYCLPTRLMKKRKNKNLQRKKTREMRKLPDQNAKQKLKKVGQKDRIMLPVELLEKRIQINKVGRLSYRINFTKLCHATKDFSKDNVIGVGVTGIMYKATLQNGRFLAVKRLHDSQLSIKRFELEIMLSGQYSHRNIVPLIGFCLEEQNERILVYQYMPNGKLSDWLNDDTTKLGWSRLIKIALGVARGLCCFHHSLHLVHLRISSECILLGNNFEPKISNVGVASMNNDVDKNIGLEKKDVCDFGCLLFELIKGKKFGPISNGLNNTSVPFSTYTYPNPMNLLEDHSGFYDVMDESLNKIEFEDEVSALLRIACDCVHPRPEQRPTMLEVYSKMGNIWEKDEICEDFDIVTSTSRDTNSFGSE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04327 395 Gene3D Phosphorylase Kinase; domain 1 79 188 - -
Vivi5g04327 395 Pfam Protein tyrosine and serine/threonine kinase 116 365 IPR001245 GO:0004672|GO:0006468
Vivi5g04327 395 ProSiteProfiles Protein kinase domain profile. 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04327 395 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 87 378 - -
Vivi5g04327 395 SUPERFAMILY Protein kinase-like (PK-like) 97 364 IPR011009 -
Vivi5g04327 395 Gene3D Transferase(Phosphotransferase) domain 1 189 265 - -
Vivi5g04327 395 Gene3D Transferase(Phosphotransferase) domain 1 266 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04327 Vivi-Chr5 140729725 140731877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04327 87 380 Receptor kinase-like Gene Family AT1G27190 31.677 8.33e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vivi5g04327 PK_Tyr_Ser-Thr 3.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04327 - - tpra:123911597 478.018