Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04324 ATGGCTTTTCAAATAAAAATGGATATTCTCTTGCAAACCTTCTTAGGAGCTTTGTTCAGTATCTTAATGACAAGTCAAAGTTTTGATAATGATATCTTGTGTTTAATGTCAATTAAGAATTCCTTGGAAGACCCAAATAATTACTTACAAAGCTGGGACTTTAGCAACACGACTGAAGGTTTCATATGTGACTTTGTAGGTGTTGCATGTTGGCATTTTGAAGAAAATAGAGTACTAAATCTCGAACTATCTAACATGGAGTTGAAGGGTCACTTTCCACGTGGCATTGTCAACTGCTCTTCGCTGACCGGCTTAGACCTTTCAAACAATGAGCTCTCAGGAACCATTCCATCTGATATATCAAACATTCTCCCATATGTTACCACTATTGATCTCTCTTATAACAAATTCACAGATGCAATTCCAACATCTTTAGCAAACTGTATTTACCTGAATATCCTTAAACTTGACCATAACTTGTTAAGCGGTGAAATTCCAAAACAACTTGGCCAACTTAGCAGGCTTAAAGAGATTTCTGTTTCTAACAATCAGTTATCAGAGTCACTACCTGTGTTCTCAGAAAAGGTAAATTTCAACTATGCTAACAATAGTAGACTTTGTGGAGGGTCTTTGAGACATTGCTCCTTGACACGTGACAAGCACGGAGATTTTTATCATTCGTTTAAGGATGGTCTTATTGTTGGCTATGTTTCTCTCTTTTTTTTTGTTATGGTCACTTGTATGTTCTACTCCAAATTTGCACATTGGGTGCATAAGTTGAAAACGAAAAATAATGACCTAAACAAAGCTATAGAATTGGGCCAATATATTTGCTCCATCATTAGCATAAGGAAACAGATGGTAGTTAATCAGATACATGAACTGTTATATATGTGGCTAGCATTCAAAGAAAGAAAAGAGATCTCTGTACTATGTGAAAGATTGACCTCAACAATATGGCTAGAAGAACTACGTGATGCAACAAATTGTTTCTCTATCGACAATGCCATTGGAGTAGGAAAGATGGGAATGATGTACGAAGGATTTATGCCTAATGGTAAGTTACTAGCTGTTAAGAGACTATTTGACTCTCGAAAATTTAAAAGGCAGTTCCTTTTAGAAACAACGATTTTGTGCAAATACAGACACCAAAATATCATTCCCTTGCTTGGGTTCTGCATTGAAGGAAAGGAAAGGCTTTTGACATATGCATACATGCCAAATGGAAGGCTTTCCAAATGGTTGTATCCTTTGGAAAGTGAAGTCATAAGATTGAAATGGCAGGAAAGAGTGAACATTGCACTTGGAATAGCTAGAGGATTATCATGGCTACATCATACATGTGAGTTGTGCATAGTGCATTTTAATATATGTTCCGAATGCATATTACTAGATGAAAACTTTGAACCCAAAATATCTAATTTCGGAGAGGCGAAATTTATGAATCCCGACACTGAAGATCATCTAGGGGTGATATTTAAAGCTAATGATGGAAAGAAGGATGTATATGACTTTGGAAGTGTTCTTTTTGAATTGATTACAGGGAAAACATATGATGAATTGTCTCATTCATATGACACTACTAATATACGTGGTAACCCTTTGAGTTTTTATAATATTATTGATAAATCTCTGACTAGTCAAGGACTTGACAATGAAGTTTGTACTCTTCTAAAGATTGCTTGTGAGTGTGTTAAATCTTTACCAGACCAGAGACCAACAATGCTTGAAATTTACAACAGTATTAGCAATGTAAGGAAGGGACGAAATGGCAATGGTGATGATAATGACACATTAAAGGAATTAGAAGGTACTTCTTCTATTACTATGGATGAAATTATTGAGGTTTAA 1851 0.3539 MAFQIKMDILLQTFLGALFSILMTSQSFDNDILCLMSIKNSLEDPNNYLQSWDFSNTTEGFICDFVGVACWHFEENRVLNLELSNMELKGHFPRGIVNCSSLTGLDLSNNELSGTIPSDISNILPYVTTIDLSYNKFTDAIPTSLANCIYLNILKLDHNLLSGEIPKQLGQLSRLKEISVSNNQLSESLPVFSEKVNFNYANNSRLCGGSLRHCSLTRDKHGDFYHSFKDGLIVGYVSLFFFVMVTCMFYSKFAHWVHKLKTKNNDLNKAIELGQYICSIISIRKQMVVNQIHELLYMWLAFKERKEISVLCERLTSTIWLEELRDATNCFSIDNAIGVGKMGMMYEGFMPNGKLLAVKRLFDSRKFKRQFLLETTILCKYRHQNIIPLLGFCIEGKERLLTYAYMPNGRLSKWLYPLESEVIRLKWQERVNIALGIARGLSWLHHTCELCIVHFNICSECILLDENFEPKISNFGEAKFMNPDTEDHLGVIFKANDGKKDVYDFGSVLFELITGKTYDELSHSYDTTNIRGNPLSFYNIIDKSLTSQGLDNEVCTLLKIACECVKSLPDQRPTMLEIYNSISNVRKGRNGNGDDNDTLKELEGTSSITMDEIIEV 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04324 616 Gene3D Transferase(Phosphotransferase) domain 1 406 605 - -
Vivi5g04324 616 Gene3D Ribonuclease Inhibitor 28 215 IPR032675 -
Vivi5g04324 616 SUPERFAMILY L domain-like 28 214 - -
Vivi5g04324 616 FunFam Nuclear pore complex protein NUP107 28 191 - -
Vivi5g04324 616 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Vivi5g04324 616 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Vivi5g04324 616 Gene3D Phosphorylase Kinase; domain 1 297 405 - -
Vivi5g04324 616 ProSiteProfiles Protein kinase domain profile. 331 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04324 616 Pfam Protein tyrosine and serine/threonine kinase 333 581 IPR001245 GO:0004672|GO:0006468
Vivi5g04324 616 SUPERFAMILY Protein kinase-like (PK-like) 313 580 IPR011009 -
Vivi5g04324 616 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 79 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04324 Vivi-Chr5 140682453 140687749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04324 29 597 Receptor kinase-like Gene Family AT3G28450 34.551 6.66e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi5g04324 PK_Tyr_Ser-Thr 3.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04324 - - psat:127106772 942.569