Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04323 ATGTATCTGCACAGGATGGCTTTTCAAATAAAAATGGATATTCTCTTGCAAACCTTCTTAGGAGCTTTGTTCAGTATCTTAATGACAAGTCAAAGTTTTGATAATGATATCTTGTGTTTAATGTCAATTAAGAATTCCTTGGAAGACCCAAATAATTACTTACAAAGCTGGGACTTTAGCAACACGACTGAAGGTTTCATATGTGACTTTGTAGGTGTTGCATGTTGGCATTTTGAAGAAAATAGAGTACTAAATCTCGAACTATCTAACATGGAGTTGAAGGGTCACTTTCCACGTGGCATTGTCAACTGCTCTTCGCTGACCGGCTTAGACCTTTCAAACAATGAGCTCTCAGGAACCATTCCATCTGATATATCAAACATTCTCCCATATGTTACCACTATTGATCTCTCTTATAACAAATTCACAGATGCAATTCCAACATCTTTAGCAAACTGTATTTACCTGAATATCCTTAAACTTGACCATAACTTGTTAAGCGGTGAAATTCCAAAACAACTTGGCCAACTTAGCAGGCTTAAAGAGATTTCTGTTTCTAACAATCAGTTATCAGAGTCACTACCTGTGTTCTCAGAAAAGGTAAATTTCAACTATGCTAACAATAGTAGACTTTGTGGAGGGTCTTTGAGACATTGCTCCTTGACACGTGACAAGCACGGAGATTTTTATCATTCGTTTAAGGATGGTCTTATTGTTGGCTATGTTTCTCTCTTTTTTTTTGTTATGGTCACTTGTATGTTCTACTCCAAATTTGCACATTGGGTGCATAAGTTGAAAACGAAAAATAATGACCTAAACAAAGCTATAGAATTGGGCCAATATATTTGCTCCATCATTAGCATAAGGAAACAGATGGTAGTTAATCAGATACATGAACTGTTATATATGTGGCTAGCATTCAAAGAAAGAAAAGAGATCTCTGTACTATGTGAAAGATTGACCTCAACAATATGGCTAGAAGAACTACGTGATGCAACAAATTGTTTCTCTATCGACAATGCCATTGGAGTAGGAAAGATGGGAATGATGTACGAAGGATTTATGCCTAATGGTAAGTTACTAGCTGTTAAGAGACTATTTGACTCTCGAAAATTTAAAAGGCAGTTCCTTTTAGAAACAACGATTTTGTGCAAATACAGACACCAAAATATCATTCCCTTGCTTGGGTTCTGCATTGAAGGAAAGGAAAGGCTTTTGACATATGCATACATGCCAAATGGAAGGCTTTCCAAATGGTTGTATCCTTTGGAAAGTGAAGTCATAAGATTGAAATGGCAGGAAAGAGTGAACATTGCACTTGGAATAGCTAGAGGATTATCATGGCTACATCATACATGTGAGTTGTGCATAGTGCATTTTAATATATGTTCCGAATGCATATTACTAGATGAAAACTTTGAACCCAAAATATCTAATTTCGGAGAGGCGAAATTTATGAATCCCGACACTGAAGATCATCTAGGGGTGATATTTAAAGCTAATGATGGAAAGAAGGATGTATATGACTTTGGAAGTGTTCTTTTTGAATTGATTACAGGGAAAACATATGATGAATTGTCTCATTCATATGACACTACTAATATACGTGGTAACCCTTTGAGTTTTTATAATATTATTGATAAATCTCTGACTAGTCAAGGACTTGACAATGAAGTTTGTACTCTTCTAAAGATTGCTTGTGAGTGTGTTAAATCTTTACCAGACCAGAGACCAACAATGCTTGAAATTTACAACAGTATTAGCAATGTAAGGAAGGGACGAAATGGCAATGGTGATGATAATGACACATTAAAGGAATTAGAAGGTACTTCTTCTATTACTATGGATGAAATTATTGAGGTTTAA 1866 0.3548 MYLHRMAFQIKMDILLQTFLGALFSILMTSQSFDNDILCLMSIKNSLEDPNNYLQSWDFSNTTEGFICDFVGVACWHFEENRVLNLELSNMELKGHFPRGIVNCSSLTGLDLSNNELSGTIPSDISNILPYVTTIDLSYNKFTDAIPTSLANCIYLNILKLDHNLLSGEIPKQLGQLSRLKEISVSNNQLSESLPVFSEKVNFNYANNSRLCGGSLRHCSLTRDKHGDFYHSFKDGLIVGYVSLFFFVMVTCMFYSKFAHWVHKLKTKNNDLNKAIELGQYICSIISIRKQMVVNQIHELLYMWLAFKERKEISVLCERLTSTIWLEELRDATNCFSIDNAIGVGKMGMMYEGFMPNGKLLAVKRLFDSRKFKRQFLLETTILCKYRHQNIIPLLGFCIEGKERLLTYAYMPNGRLSKWLYPLESEVIRLKWQERVNIALGIARGLSWLHHTCELCIVHFNICSECILLDENFEPKISNFGEAKFMNPDTEDHLGVIFKANDGKKDVYDFGSVLFELITGKTYDELSHSYDTTNIRGNPLSFYNIIDKSLTSQGLDNEVCTLLKIACECVKSLPDQRPTMLEIYNSISNVRKGRNGNGDDNDTLKELEGTSSITMDEIIEV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04323 621 SUPERFAMILY Protein kinase-like (PK-like) 318 585 IPR011009 -
Vivi5g04323 621 Pfam Protein tyrosine and serine/threonine kinase 338 586 IPR001245 GO:0004672|GO:0006468
Vivi5g04323 621 Pfam Leucine rich repeat N-terminal domain 34 76 IPR013210 -
Vivi5g04323 621 Gene3D Transferase(Phosphotransferase) domain 1 411 610 - -
Vivi5g04323 621 Gene3D Ribonuclease Inhibitor 33 220 IPR032675 -
Vivi5g04323 621 Gene3D Phosphorylase Kinase; domain 1 302 410 - -
Vivi5g04323 621 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 84 587 - -
Vivi5g04323 621 FunFam Nuclear pore complex protein NUP107 33 196 - -
Vivi5g04323 621 ProSiteProfiles Protein kinase domain profile. 336 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04323 621 Pfam Leucine rich repeat 131 190 IPR001611 GO:0005515
Vivi5g04323 621 SUPERFAMILY L domain-like 33 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04323 Vivi-Chr5 140682452 140687555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04323 34 602 Receptor kinase-like Gene Family AT3G28450 34.551 6.67e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi5g04323 PK_Tyr_Ser-Thr 3.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04323 - - psat:127106772 949.118