Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04285 ATGGAAGAAACTATGCTTAGCGACGAATTACCAAAATTCAGTGATATTAGACGCTATTTCTGCCCATACTGCAACATCTGTAGGTCCAAAAAAACCCTAATTACCTCCCACATCAATTCCCAACACAAGGAAGAGTTGGAGAAAGCAAAAGTTGAATCTGAACATGAAGCAGATGTTGGTTTGAAAGATAATACATGTGAGGAGTGTGGTGCTAGTTTCAAAAAACATGCTTATTTGTTGCAGCATATGCAAAGCCATTCTCTTGAGAGGCCATATGTATGTACACTTGAGGATTGCAATGCAAGTTACAGAAGAAAGGACCATTTGAATCGTCACCTTCTACAGCATCAAGGGAAAAATTTCAAATGTCCTATTGAGAATTGTAAAAGTGATTTCTCTTTGCAAAGCAATTTGAAAAGACATCTTGACGAGATTCATGATGAAAATTCTACACCTGCTAGGGATGGTGATAATCAGAAGCGTTTTGTATGTCCTGAAATGGGTTGCGGAAAGGTTTTTCGATATGCATCACAGCTACAAAAGCATGAAGATTCTCATGTTAAGCTGGATACAGTTGACGTGGTGTGCTTAGAACCGGGTTGCTTGAAACATTTCCCCAATTCCGAGTGCCTTAAGGCTCATGTTAAGTCCTACCATCAATATGTAACCTGTGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAAAGGCATCTCCGTACACACGAAACCGGCACTTCATCAGAACCCTTTAAATGTGAATTTAAGGATTGTGACTGCACATTCTCAACTAAATCTAATCTTCAAAAGCATGAGAAGGCAGTACACTTTGAAGTAAGGCCTTTTGTGTGTGAATTTCCTAACTGTGGCATGAGATTTGCTTATAAACACGTGAGAGACAATCATGAAAAGACGGCAAAACATCTTTTTACCCTTGGTGATTTTGAAGAAGCTGATGAAGACTTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATGTCCTACAGTAGATATGTTGATTAGGAAGAGAGATACTCCACCTTAA 1050 0.3962 MEETMLSDELPKFSDIRRYFCPYCNICRSKKTLITSHINSQHKEELEKAKVESEHEADVGLKDNTCEECGASFKKHAYLLQHMQSHSLERPYVCTLEDCNASYRRKDHLNRHLLQHQGKNFKCPIENCKSDFSLQSNLKRHLDEIHDENSTPARDGDNQKRFVCPEMGCGKVFRYASQLQKHEDSHVKLDTVDVVCLEPGCLKHFPNSECLKAHVKSYHQYVTCDTCGTKQLKKNMKRHLRTHETGTSSEPFKCEFKDCDCTFSTKSNLQKHEKAVHFEVRPFVCEFPNCGMRFAYKHVRDNHEKTAKHLFTLGDFEEADEDFRSRPRGGVKRKCPTVDMLIRKRDTPP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04285 349 SUPERFAMILY beta-beta-alpha zinc fingers 102 147 IPR036236 -
Vivi5g04285 349 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Vivi5g04285 349 Gene3D Classic Zinc Finger 93 118 - -
Vivi5g04285 349 PANTHER ZINC FINGER PROTEIN 10 347 - -
Vivi5g04285 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Vivi5g04285 349 Gene3D Classic Zinc Finger 119 157 - -
Vivi5g04285 349 Gene3D Classic Zinc Finger 10 92 - -
Vivi5g04285 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Vivi5g04285 349 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Vivi5g04285 349 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Vivi5g04285 349 SUPERFAMILY beta-beta-alpha zinc fingers 64 116 IPR036236 -
Vivi5g04285 349 SUPERFAMILY beta-beta-alpha zinc fingers 158 187 IPR036236 -
Vivi5g04285 349 SUPERFAMILY beta-beta-alpha zinc fingers 233 291 IPR036236 -
Vivi5g04285 349 Gene3D Classic Zinc Finger 222 309 - -
Vivi5g04285 349 SMART c2h2final6 252 277 IPR013087 -
Vivi5g04285 349 SMART c2h2final6 194 219 IPR013087 -
Vivi5g04285 349 SMART c2h2final6 64 86 IPR013087 -
Vivi5g04285 349 SMART c2h2final6 222 243 IPR013087 -
Vivi5g04285 349 SMART c2h2final6 121 146 IPR013087 -
Vivi5g04285 349 SMART c2h2final6 162 186 IPR013087 -
Vivi5g04285 349 SMART c2h2final6 92 116 IPR013087 -
Vivi5g04285 349 SMART c2h2final6 19 42 IPR013087 -
Vivi5g04285 349 SMART c2h2final6 283 309 IPR013087 -
Vivi5g04285 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 191 IPR013087 -
Vivi5g04285 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Vivi5g04285 349 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Vivi5g04285 349 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Vivi5g04285 349 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Vivi5g04285 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Vivi5g04285 349 Gene3D Classic Zinc Finger 158 221 - -
Vivi5g04285 349 FunFam Zinc finger 45-like 60 87 - -
Vivi5g04285 349 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vivi5g04285 349 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Vivi5g04285 349 Pfam Zinc finger, C2H2 type 252 277 IPR013087 -
Vivi5g04285 349 Pfam Zinc finger, C2H2 type 162 186 IPR013087 -
Vivi5g04285 349 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04285 Vivi-Chr5 140088224 140090729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04285 88 312 C2H2 Transcription Factor Family AT1G72050 50.362 2.84e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g04285 zf-C2H2 0.00034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04285 K09191 - gmx:100801812 567.77