Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04267 ATGGAACAAGTTAATGACAGTAGTAGATTCTTTGTGTCTCAAGATGAGTTGTTTTCCAATGGTGAAGAAGACATCAGTAAGGGAAAACCTAGAAAGAAATACTATAATGAAGATGGCACAAGAATGTTTGTATCAAAGAATCTTGAGATTGAAAGAAGGAGGAGAGATAAACTTCATTCTAGGCTTTGCACACTTCGTTCTATAATGCTCAAAGAAAGTATTATTGAAGATGCTATTACTTATGTCAAGAAGCTTCAAGATGAAGTTAATAGTCTCACACAAGAGCTTCAAGCATTGGAAGCAAAGGAAAACTTGGAGCGGAAAATCGATGAAGTTTCTGGTGCAGAAGAGATGAAGAAATGGGGGATGCAGGAAGAGATTCATGTGGAAAAAACTGATGGGACTAATCTGTGGATTAAGATGATCATTGAGAAAAAGAGAGAGAGGTTCAACAAATTAATGGAGATTATGAATGATTTATGCATTGAAATGACAGACATAAGTGTTACAACTATAAAAGGAGCATACATGATCACAACTTGCTTAAAGAACTTGGGTGGTGAACCATTTGATGTTGATCAAGCAAAGTATTGGTTGCAAGATATAATCAAGATGATTTAG 621 0.3527 MEQVNDSSRFFVSQDELFSNGEEDISKGKPRKKYYNEDGTRMFVSKNLEIERRRRDKLHSRLCTLRSIMLKESIIEDAITYVKKLQDEVNSLTQELQALEAKENLERKIDEVSGAEEMKKWGMQEEIHVEKTDGTNLWIKMIIEKKRERFNKLMEIMNDLCIEMTDISVTTIKGAYMITTCLKNLGGEPFDVDQAKYWLQDIIKMI 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04267 206 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 19 183 - -
Vivi5g04267 206 SMART finulus 48 91 IPR011598 GO:0046983
Vivi5g04267 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 100 IPR036638 GO:0046983
Vivi5g04267 206 Gene3D - 44 112 IPR036638 GO:0046983
Vivi5g04267 206 Coils Coil 75 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04267 Vivi-Chr5 139621964 139622879 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04267 43 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 40.449 6.28e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04267 - - mtr:25493245 200.675