Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04264 ATGGAACCAGGAAATGACCATAGACTATATGTGTCTATAGAGGATTTAGGTTTCAATGGTGAAAATTGCAACAATAGAGGAAAATTGAGAAAAATTAACCACTATGATGATGATACACATGTGTTCACATCAAAGAACCTTGAGACAGAAAGAAAAAGAAGGGAGAAACTCAGTAGCAGACTCTTGATGCTTCGTTCCTTAGTACCAAACATCACAAATATGAACAAAGCAAGCATTATTGAAGATGCTATCACTTACATGCAAAAATTGCAAAATGAAGTTAAGAGTCTCACGGAAGAGCTTCATGATATGGGAGGATCAAAAGAGAAAAAAACTGAGGCAAAAATAAGCGACTGTGTTGCTCCTGCTGACGAAGATCAGATGAAAAATTGGGGGATTCAGGAAGAGATTGAGGTGGCAAAAGTTGATAAGAATAAGATATGGGTTAAGATGATGCTTGTGAACAAGAGAGGAAGGATTATGAAACTAATTGAAGATTTGAATGATTCACGCATTGAAATGATTGACATTAGTGTTACAACTATAGAAGAAGCATATCTTCTTACAGCAACATTACAGGGCTTAGATGGTGAACCACTTGAAGAATATCACCTTCCAACTCTTATCAAGTTCGATTAG 639 0.3615 MEPGNDHRLYVSIEDLGFNGENCNNRGKLRKINHYDDDTHVFTSKNLETERKRREKLSSRLLMLRSLVPNITNMNKASIIEDAITYMQKLQNEVKSLTEELHDMGGSKEKKTEAKISDCVAPADEDQMKNWGIQEEIEVAKVDKNKIWVKMMLVNKRGRIMKLIEDLNDSRIEMIDISVTTIEEAYLLTATLQGLDGEPLEEYHLPTLIKFD 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04264 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 103 IPR036638 GO:0046983
Vivi5g04264 212 Coils Coil 80 107 - -
Vivi5g04264 212 SMART finulus 47 96 IPR011598 GO:0046983
Vivi5g04264 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Vivi5g04264 212 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 32 191 - -
Vivi5g04264 212 Pfam Helix-loop-helix DNA-binding domain 47 91 IPR011598 GO:0046983
Vivi5g04264 212 Gene3D - 43 105 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04264 Vivi-Chr5 139563258 139564313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04264 42 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 42.675 3.05e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g04264 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04264 - - vvo:131605585 395.586