Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04262 ATGGCGAGTGACTTTCCGGAACACTTCAAATGTCCGATTTCCCTCGAAATAATGTCTGACCCAGTCATCCTATCTTCCGGTCACACATTCGATCGTCCTTCAATCCAACGATGGCTAGACGATGGTCACAGAACTTGTCCAATTACCAAACTACCCCTCCCTGATAATCCTTCCCTTATTCCCAATCACGCTCTTCGAAGCTTAATCTCTAGCTACACACTCTTACCACCGCTGCACCAGATCATGTCCCAACCGGAAACCCTAATTTCGTCTTTAACCGCTTCTTCCTCTTCCTCCGATTTCAAAATCGACTCGCTCCGCCAACTCGGTCGACTTTCGAAGCGTGACGCGAACTTCCGCCGCCGTCTTGTTGATTCCGGTGCCGTCTTCGCCGTTCTCTTCTGTATCGACTCCGCTTCCGGTGACTCTAAGCTTCAGGAGAAGGCTCTATCTCTTCTTCTGAACCTTAGTCTCGACGACGACACTAAGATTGGACTTGTCGCAGAAGGTGCAATTTCACGCGTTGTTGCTTTTCTCCTCCGTGCAGCTTCGTCTGACTGCCGTGCTTTGGCTGCAACCATAATCACGAGCCTTGCGGTTGTGGAGGTGAATAAAGCGACTATCGGAGCTTTCCCGGGGGCAATCGGAGCTCTGGTGGCGATTCTTCGAGACGGGAAAGGGAGAGAGAGGAAAGAAGCGGCTACTGCGCTTTACGCGCTTTGCTGTTTTCGGGATAATCGGAAAAGGGCGGTGGATTGTGGCGCGGTGCCAATTCTGATGAGATGTGTTGAATGTGGACTTGAGAGGGGTGTTGAGGTTATTGGTGTTTTGGCTAAGTGTAAGGAAGGGAGGGAACAGTTGGAGAGTTATAGTGGTTGTGTGCAGATTCTGGTTCGTGTGTTGAGGAATGGAAGCTCAAGAGGGATTCAGTATTCACTGTTGGCACTTACTTCATTATGTTTGTATAGCAAGGAAATGCTTTTGGTTACCCTGCAAGAAGGTGTTTTGGAAATCTGTGTTGGGTTGTTAGTGGATGATAATGAGAAAGTTAGGAGAAATTCCTCCAATTTGATTAGGATCCTTCGCGGCAACAACCACCACTGGATCAGTTGA 1113 0.4888 MASDFPEHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDDGHRTCPITKLPLPDNPSLIPNHALRSLISSYTLLPPLHQIMSQPETLISSLTASSSSSDFKIDSLRQLGRLSKRDANFRRRLVDSGAVFAVLFCIDSASGDSKLQEKALSLLLNLSLDDDTKIGLVAEGAISRVVAFLLRAASSDCRALAATIITSLAVVEVNKATIGAFPGAIGALVAILRDGKGRERKEAATALYALCCFRDNRKRAVDCGAVPILMRCVECGLERGVEVIGVLAKCKEGREQLESYSGCVQILVRVLRNGSSRGIQYSLLALTSLCLYSKEMLLVTLQEGVLEICVGLLVDDNEKVRRNSSNLIRILRGNNHHWIS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04262 370 Gene3D - 270 367 IPR011989 -
Vivi5g04262 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 74 IPR013083 -
Vivi5g04262 370 SUPERFAMILY ARM repeat 65 361 IPR016024 -
Vivi5g04262 370 SUPERFAMILY RING/U-box 3 73 - -
Vivi5g04262 370 Gene3D - 85 269 IPR011989 -
Vivi5g04262 370 CDD RING-Ubox_PUB 6 55 IPR045210 -
Vivi5g04262 370 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Vivi5g04262 370 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Vivi5g04262 370 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Vivi5g04262 370 PANTHER U BOX DOMAIN-CONTAINING 6 357 - -
Vivi5g04262 370 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04262 Vivi-Chr5 139516627 139518311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04262 1 363 U-box Gene Family AT4G21350 58.602 5.39e-140 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04262 - - gmx:100785141 513.072