Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04259 ATGTTTTTTTATTCTCAAACCGACACCATGAAAGAGCTTCTACTCATTCCATTTCTTCTTCTGTTGATGCTTTTTCACCCTTCTTGCTACTCACTTGACACCATAACGCGAAACCAAACAATCAAAGACGGCGACGTTTTGGTCTCCAACCCTCAAGGAACATTCGTACTAGGTTTCTTCAGCCTGAAGCCAGATTCCAAAACCCGATACCTTGGTATATGGTACAACAGAATTTCTGAACAAACCGTTGTTTGGGTTGCAAACAGAGACACTCCTCTCAGTGACACTTCCGGTGTTCTCTCCATCAACAATGGAAACCTCGTACTCCACGACCTTAACAAAAACAAAAACCTTAAACCCATTTGGTCTTCCAATTTTTCAACTTCTAGTTCCACCTCATTTGCTGACTCTTCAGCTAACCTTTTGGATACAGGAAACTTGGTCTTGTTTCATAATAATGGAAAGAACGTTGTTTGGCAGAGTTTTGATTTTCCAACTAACACTATGCTTCCTTTCATGAAACTCGGATTGGACCGTAAAACTGGTCTGAACCGGTTCCTCACATCATGGAAATCCCCGAGTGACCCAGGAACCGGAAACGTGACATACTGGATTGACCCGACCGGTTTTCCTCAACTGTTTCTGTATAGAAACAAATCTCCAACATGGAGAGTCGGGTCGTGGACGGGTCAAAGATGGAGCGGAGTACCCGAAATGACTCCGAATTTCATATTCAACGTTAGTTACATCAACAACGAAGATGAAGTTTCTATACTATACGGTGTGAAGGATCCAAGGGTGTTATCGAGAATGGTTTTGGATGAAACGGGTCATGTGAGGAGGCTGACGTGGCAGCCTAGCGAACGTAGATGGTTTCAGATTTGGTATGGTCCGAAAGAGGAATGTGATGATTTCAAACAGTGCGGGTCGAACTCGAATTGCGACCCGTATAATGCGGATAAGTTTGAGTGTGAGTGTTTACCCGGGTTTGAACCGAAGTTTGCGAGGGAGTGGTATTTGAGAGACGGGTCGGGTGGGTGTGTGAGGAAGAGAAATGTTTCCACGTGTCGGAGTGGGGAAGGGTTTGTGAAAGTGGCACGTGTGAAAGTGCCTGATACTTCTAAGGCACGTGTGAATGAGAGTTTGGGTTTGAGAGAGTGTAGAGAGAAGTGTTTGGAGGATTGTTCTTGTGTTGCGTATACGAGTGAAAATGAGGTATCTGAGAGTGGGTGTGTTACTTGGTATGGTGATATGGAAGATACAAGAACTTATACACAAGTTGGACAAGATTTGTATCTACGAGTGGATGCACATGAATTGGCTATGTATGCAAAACATCCATATGGTTCTCTTGGCAAAAAGGGGATGGTGGCAATAGTAGTTATTTCTTCTTGCTTGGTGTTGTTTATGGGGACCATTTTCGTGTATTGGTTTGTGAAGTCCAGGAAACAATGGTCGAAAAGGGATCCCAAGTATTCGTTTCGTCTTAGCTTTGATGACTCTTCTACTCAGCAAGAATTTGATAGTACAAACAATTCAAATTTACCGTTCTTTGATCTTAGCTCCATAGCTGCTGCAACAGATAATTTTTCACTTTCTAACAAGCTTGGTGAAGGTGGTTTTGGTTCTGTTTATAAGGGTGTATTGAGCAATGGAATGGCGATTGCAGTGAAGAGACTGTCAAAGTATTCTGGACAAGGCATAGAAGAGTTTAAAAACGAGGTTGTTTTGATTTCAAAACTGCAGCACAGAAATCTTGTGAGGATCTTAGGTTGCTGCATTCAAGGAGAAGAAAAGATGTTAATCTATGAGTATCTGCCCAACAAAAGCTTAGACTTTTTCATTTTTGATAAATCTAAAAGCTCAGAACTAGAGTGGAGAAAGCGGTTTGATATTATTTGTGGTGTTGCTAGAGGGATCTTATATCTTCACCATGACTCGCGATTAAGAATAATTCATAGAGACCTAAAGGCCAGCAATGTCTTGTTGGATTCTGCATTGAACCCAAAAATAGCAGATTTTGGTATGGCGAGAATGTTTGGTGGAGATCAAATTGAAGCCGTTACAAATCGTGTCGTTGGAACCTATGGTTACATGTCTCCAGAATATGCCATGGAAGGACAGTTTTCAGTGAAGTCTGATGTATATAGCTTTGGAGTTTTACTGCTAGAGATTATTACAGGAAAGAAGAACACTGGGCTATATGAAGACAATGAATCCACAAATTTAGTTGGACACATATGGGACCTATGGAGAGAAGACAAAGACATGGAGATTGTTGATCGGTCATTAGGAGATTCGTTCTCTGAGCTTGAAGTCCAAAGATGCATCCAAATTGGGCTTTTGTGTGTACAAGATTATGCTGTTGACAGACCATCTATGTCAACTGTTGTATCTATGCTGGGAAATGACTCAACTCTTCCTACTCCAAAACAACCAGCATTTATTTTCAAGAAAAGTAACTATGAGAGTTCAAATCCATCAACCAGTGGAGGAATTTACTCAGTAAATGATGTAAGTATGACTATGATGGAAGCTCGCTGA 2544 0.4143 MFFYSQTDTMKELLLIPFLLLLMLFHPSCYSLDTITRNQTIKDGDVLVSNPQGTFVLGFFSLKPDSKTRYLGIWYNRISEQTVVWVANRDTPLSDTSGVLSINNGNLVLHDLNKNKNLKPIWSSNFSTSSSTSFADSSANLLDTGNLVLFHNNGKNVVWQSFDFPTNTMLPFMKLGLDRKTGLNRFLTSWKSPSDPGTGNVTYWIDPTGFPQLFLYRNKSPTWRVGSWTGQRWSGVPEMTPNFIFNVSYINNEDEVSILYGVKDPRVLSRMVLDETGHVRRLTWQPSERRWFQIWYGPKEECDDFKQCGSNSNCDPYNADKFECECLPGFEPKFAREWYLRDGSGGCVRKRNVSTCRSGEGFVKVARVKVPDTSKARVNESLGLRECREKCLEDCSCVAYTSENEVSESGCVTWYGDMEDTRTYTQVGQDLYLRVDAHELAMYAKHPYGSLGKKGMVAIVVISSCLVLFMGTIFVYWFVKSRKQWSKRDPKYSFRLSFDDSSTQQEFDSTNNSNLPFFDLSSIAAATDNFSLSNKLGEGGFGSVYKGVLSNGMAIAVKRLSKYSGQGIEEFKNEVVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDFFIFDKSKSSELEWRKRFDIICGVARGILYLHHDSRLRIIHRDLKASNVLLDSALNPKIADFGMARMFGGDQIEAVTNRVVGTYGYMSPEYAMEGQFSVKSDVYSFGVLLLEIITGKKNTGLYEDNESTNLVGHIWDLWREDKDMEIVDRSLGDSFSELEVQRCIQIGLLCVQDYAVDRPSMSTVVSMLGNDSTLPTPKQPAFIFKKSNYESSNPSTSGGIYSVNDVSMTMMEAR 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04259 847 ProSiteProfiles PAN/Apple domain profile. 356 436 IPR003609 -
Vivi5g04259 847 PIRSF SRK 5 847 IPR024171 GO:0004674
Vivi5g04259 847 Pfam Protein tyrosine and serine/threonine kinase 531 747 IPR001245 GO:0004672|GO:0006468
Vivi5g04259 847 SUPERFAMILY Protein kinase-like (PK-like) 506 801 IPR011009 -
Vivi5g04259 847 SMART ntp_6 357 435 IPR003609 -
Vivi5g04259 847 SMART blect_4 38 165 IPR001480 -
Vivi5g04259 847 Pfam PAN-like domain 356 420 IPR003609 -
Vivi5g04259 847 Gene3D Transferase(Phosphotransferase) domain 1 606 811 - -
Vivi5g04259 847 ProSiteProfiles EGF-like domain profile. 298 336 IPR000742 -
Vivi5g04259 847 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 793 - -
Vivi5g04259 847 Gene3D Phosphorylase Kinase; domain 1 493 605 - -
Vivi5g04259 847 ProSiteProfiles Protein kinase domain profile. 530 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04259 847 Gene3D - 29 162 IPR036426 -
Vivi5g04259 847 CDD B_lectin 38 165 IPR001480 -
Vivi5g04259 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 162 - -
Vivi5g04259 847 Pfam S-locus glycoprotein domain 223 334 IPR000858 GO:0048544
Vivi5g04259 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 496 605 - -
Vivi5g04259 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 606 809 - -
Vivi5g04259 847 SMART serkin_6 530 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04259 847 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 196 IPR036426 -
Vivi5g04259 847 CDD STKc_IRAK 536 801 - -
Vivi5g04259 847 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
Vivi5g04259 847 Pfam D-mannose binding lectin 82 191 IPR001480 -
Vivi5g04259 847 CDD PAN_AP_plant 354 435 - -
Vivi5g04259 847 ProSiteProfiles Bulb-type lectin domain profile. 32 162 IPR001480 -
Vivi5g04259 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Vivi5g04259 847 Pfam Domain of unknown function (DUF3403) 803 847 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04259 Vivi-Chr5 139457310 139461227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04259 454 815 Receptor kinase-like Gene Family AT4G23190 54.620 8.45e-131 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04259 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04259 - - gmx:100812814 1339.71