Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04258 ATGATGCAGCAATTAAACCAAGATTCCCCTGGAGAAGATAATGGTGCTCCACATCCAAATCTACCATTTTTCAACTTTAAGACGATAATGACAGCTACAAGAAATTGTGCTAATGAGAATAAGCTTGGACAAGGTGGATTTGGCTCAGTCTATAAGGGTTGCTTGGTTAATGGACAAGAGATAGCAGTGAAAAGATTATCCAAAGATTCAGGTCAAGGCAAAGAAGAGTTTAAAACTGAAGTTACACTTTTAGTTAAACTCCAACACAGAAATCTAGTGAGATTGCTCGGTTGTTGCTTTGAAAAAAAAGAAAGGATGCTAGTTTACGAATACTTACCAAACAAAAGCCTAGACTTCTTTATATTCGATCTAAACCAAAAATCATCATTGGATTGGGCTAAACGTTTTGAGATTATATGTGGGATTGCTCGAGGTGTATTATATCTTCATCAAGATTCAAGGCTTAAAATAATTCATAGAGATCTAAAAGCTAGCAATGTTCTCCTTGATGCTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAGATCCAAGCAAGAACAAATAGATTGGTTGGAACATATGGATATATGGCACCAGAATATGCAATGGAAGGACTATATTCAACAAAATCTGATGTCTTTAGTTATGGGGTCTTGATACTAGAAATTATTGCTGGACAAAGAAACACACGTTATGAAACAGGAAGAGCATCCCCAAATTTAATTGGACATGTGTGGACACTATGGACAGAAGGAAAGGCCATGGATATAGTTGATCTAGCACTAAACCAGTCTTATCCTTCTGATATAGTTCTGAAATGCATTCAAATTGGACTCATGTGTGTGCAAGAAAATGCCATGAATAGACCATCCATGTTAGAAGTTGTTTTGATGCTAGCCAATGAAACACCTCTCTTCCCACCTCAAAAACCAGCATTTGTATTAAATGGCAACCAAGTTTTGCAAGAGTCTTCAACATCAGGAGGAGGTTCTTCAATAAATGAATTAACAGAAACTACCATAAGTGCTCGTTAA 1059 0.3654 MMQQLNQDSPGEDNGAPHPNLPFFNFKTIMTATRNCANENKLGQGGFGSVYKGCLVNGQEIAVKRLSKDSGQGKEEFKTEVTLLVKLQHRNLVRLLGCCFEKKERMLVYEYLPNKSLDFFIFDLNQKSSLDWAKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQARTNRLVGTYGYMAPEYAMEGLYSTKSDVFSYGVLILEIIAGQRNTRYETGRASPNLIGHVWTLWTEGKAMDIVDLALNQSYPSDIVLKCIQIGLMCVQENAMNRPSMLEVVLMLANETPLFPPQKPAFVLNGNQVLQESSTSGGGSSINELTETTISAR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04258 352 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 112 315 - -
Vivi5g04258 352 Gene3D Phosphorylase Kinase; domain 1 12 111 - -
Vivi5g04258 352 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Vivi5g04258 352 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 111 - -
Vivi5g04258 352 Gene3D Transferase(Phosphotransferase) domain 1 112 312 - -
Vivi5g04258 352 CDD STKc_IRAK 42 307 - -
Vivi5g04258 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vivi5g04258 352 ProSiteProfiles Protein kinase domain profile. 36 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04258 352 ProSitePatterns Protein kinases ATP-binding region signature. 42 64 IPR017441 GO:0005524
Vivi5g04258 352 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 349 - -
Vivi5g04258 352 Pfam Protein tyrosine and serine/threonine kinase 39 305 IPR001245 GO:0004672|GO:0006468
Vivi5g04258 352 MobiDBLite consensus disorder prediction 331 352 - -
Vivi5g04258 352 SMART serkin_6 36 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04258 Vivi-Chr5 139454862 139457225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04258 24 352 Receptor kinase-like Gene Family AT4G11530 54.006 2.80e-127 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04258 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04258 - - tpra:123914661 607.831