Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04256 ATGTCATTGGTCATTGCTCCATTGTATGGAAAATTAATGGCTTCAAAGTCAAGTGATTATGTACTATTGAAGAGTAAAATTTATGTCAGTTACAATATATCAACTCAATTTGCTCCTCCAAGACTAAAATACAACAGCAACTCAATGGACTATGCAAATAATCTTGTCTACCTTGTCATAAACCAGAATCATAGATATAATAATTTGCTGCTAAACTCTTTGCTTATACTCCTTTTGACATTCTCTTTTTGCTCTTGTTCTTCTGATACCATATCTATTCATAATCCCATAAGAGATGGTGGTGATCTTCTCGTTTCTAAATCTAAAACATTTGCGCTTGGATTCTTCACTCCTGGAAAATCCACCTCTCGCTATCTTGGAATTTGGTACTACAATAACAATTTGCCAAATCCAACTGTTGTTTGGGTTGCAAATAGAGATAGTCCAATCAATGACACGTCTGGAATCCTATCAATCGACCCGAGTGGAAATCTAGTACTCCACCACAACCTTAGCACCATTCCCATTTGGTCTAGCAATGTTTCAATTCCACAATCACAAACAAATAACAACAGTATTGTTATAGCTCAACTATCAGATTTAGCAAACTTTGTTCTCATGCTAAACAACAGCAAAACTGTTTTCTGGGAAAGCTTTGATCATCCAACAGACACCATGCTTTCATATCAAAGGGTTGGTTTTGATAGAAAATCTAATCAAAGCTGGTTCCTTCAATCCTGGAAGACAGATGATGACCCTGGAAAAGGTGCATATACTTTAAAATTCAGCACTGTTGGTAAACCTCAGTTGTTTATATATAACCGGAACAATCCTTTGTGGCGTGGTGGCCCTTGGAATGGAGAACTATTAGCAGGTGTGCCAAACCTTAAACGAGATATGGCCCTTTTTAACGTTACTTTGGTTGAAGATGACAACTATTTAGCACTCACCTATAACATGCTTGATAAGTCTGTCATTACTAGCATAGTGCTTGAGAAATCTGGTTTCCTTCAATCATTCACATGGGACAGTCAAAAGAGTCAATGGAGCCCGTACTTGTCTGAACCAACAAACCAATGTGATAACTATGGAACATGTGGATCAAATAGTAATTGTGATCCTTTGAACTTGGAGAGCTTTAAGTGTTCTTGTTTACCTGGTTTTGAACCCAAATATCCACGTGATTGGTATGATAGTAGAATCGGGTCCGGAGGATGTGTAAGGAAGAAAGGTGTATCTGTTTGTAGGAACGGAGAAGGGTTTGTCAAAGTTGTAAGCTTGAAAGTTCCTGATACATCTGTGGCAGTTGTTAAAGGTGGTTTAAGTTTGGAAGAATGTGAGAAAGAATGCTTGAGAAACTGCTCTTGTACTGCCTATGCCGTTGATGATGTGACAAATGGTGGAAGTGGTTGTTTGGCATGGTATGGGAATTTAATGGACATTCAGAAACTCAGTGATCAAGGCCAAGATTTGTTTTTACGCGTCGATAAAGTTGAACTAGCTAATTACTACACAAAAAGCAAAGGAGCCCTTGATAAAAAGAGGTTGGCTGCAATTCTGGTAGCTTCTATTGTTGTAACTGTTCTCCTCCTCTCCTGTGTGTATTGCAGGTGGAAGAAAAAAAGAAAGGATATGATGCTGCATTTAAGCCAAGATTTCTCTGGAGAAGAGAATGATGCTCAAAGCAACACACATCCAAATCTACCATTTTTCAATTTTAAAACAATTATGAAAGCTACTGGAAATTGTGGTCATGAGAATAAACTTGGACAAGGTGGATTTGGCTCTGTCTATAAGGGTTGCTTGGTTGATGGACAAGAGATAGCAGTGAAAAGATTATCCAAAGATTCAGGTCAAGGCAAAGAAGAGTTTAAAAATGAAGTTAGACTTTTAGTTAAACTCCAACACAGAAATCTAGTGAGATTGCTCGGTTGCTGCTTTGAAAAAGAAGAAAGGATGCTAGTTTACGAATACCTACCAAACAAAAGCCTAGACTTCTTTATATTCGATCTAAACCAAAGGTCGTCATTGGATTGGAGTAAGCGTTTTGAAATTATTTGTGGGGTTGCTAGAGGTGTGTTATATCTTCATCAAGATTCGAGGCTGAAAATAATTCATAGAGATCTGAAAGCCAGCAACGTTCTCCTTGATGCAGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAGGACGAAATCCAAGAAAGAACAAAAAGATTGGTTGGAACATATGGATATATGGCACCAGAATATGCTATGGAAGGACTATATTCAACAAAATCTGATGTCTTCAGTTATGGGGTCTTGCTACTAGAAATTATTGCTGGACAAAGAAACACACATTGTGAAACAGGAAGAGCATCCCCAAATTTAATTGGACGTGTGTGGACACTATGGACAGAAGGAAAGGCCTTGGATACAGTTGATCCAACAATAAACCAGTCTTATCCTCCTGCTATAGTTCTGAGATGCATTCAAATTGGACTCTTGTGTGTGCAAGAAAATGCCATGAATAGACCATCAATGTTAGAAGTTGTTTTCATGCTACGCAATGAAACACTTCTTTCCCACCCTCAAAAACCAGCATTCTTATGTGATGGCATCCAAAACTGGCAAGAGTCATCAACTTCAGGAGGAGGATCTTCAATAAATGAAGTAACAGAAACTACTATCAGTGCTCGCTAG 2700 0.3815 MSLVIAPLYGKLMASKSSDYVLLKSKIYVSYNISTQFAPPRLKYNSNSMDYANNLVYLVINQNHRYNNLLLNSLLILLLTFSFCSCSSDTISIHNPIRDGGDLLVSKSKTFALGFFTPGKSTSRYLGIWYYNNNLPNPTVVWVANRDSPINDTSGILSIDPSGNLVLHHNLSTIPIWSSNVSIPQSQTNNNSIVIAQLSDLANFVLMLNNSKTVFWESFDHPTDTMLSYQRVGFDRKSNQSWFLQSWKTDDDPGKGAYTLKFSTVGKPQLFIYNRNNPLWRGGPWNGELLAGVPNLKRDMALFNVTLVEDDNYLALTYNMLDKSVITSIVLEKSGFLQSFTWDSQKSQWSPYLSEPTNQCDNYGTCGSNSNCDPLNLESFKCSCLPGFEPKYPRDWYDSRIGSGGCVRKKGVSVCRNGEGFVKVVSLKVPDTSVAVVKGGLSLEECEKECLRNCSCTAYAVDDVTNGGSGCLAWYGNLMDIQKLSDQGQDLFLRVDKVELANYYTKSKGALDKKRLAAILVASIVVTVLLLSCVYCRWKKKRKDMMLHLSQDFSGEENDAQSNTHPNLPFFNFKTIMKATGNCGHENKLGQGGFGSVYKGCLVDGQEIAVKRLSKDSGQGKEEFKNEVRLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDLNQRSSLDWSKRFEIICGVARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQERTKRLVGTYGYMAPEYAMEGLYSTKSDVFSYGVLLLEIIAGQRNTHCETGRASPNLIGRVWTLWTEGKALDTVDPTINQSYPPAIVLRCIQIGLLCVQENAMNRPSMLEVVFMLRNETLLSHPQKPAFLCDGIQNWQESSTSGGGSSINEVTETTISAR 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04256 899 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 548 658 - -
Vivi5g04256 899 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 83 219 - -
Vivi5g04256 899 CDD STKc_IRAK 589 854 - -
Vivi5g04256 899 ProSiteProfiles Bulb-type lectin domain profile. 88 219 IPR001480 -
Vivi5g04256 899 CDD EGF_CA 358 392 - -
Vivi5g04256 899 CDD B_lectin 104 222 IPR001480 -
Vivi5g04256 899 Pfam PAN-like domain 415 481 IPR003609 -
Vivi5g04256 899 MobiDBLite consensus disorder prediction 878 899 - -
Vivi5g04256 899 Pfam S-locus glycoprotein domain 280 391 IPR000858 GO:0048544
Vivi5g04256 899 PIRSF SRK 61 899 IPR024171 GO:0004674
Vivi5g04256 899 Gene3D Hepatocyte Growth Factor 413 493 - -
Vivi5g04256 899 SMART serkin_6 586 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04256 899 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 659 862 - -
Vivi5g04256 899 Gene3D Transferase(Phosphotransferase) domain 1 659 865 - -
Vivi5g04256 899 Pfam D-mannose binding lectin 139 248 IPR001480 -
Vivi5g04256 899 Pfam Protein tyrosine and serine/threonine kinase 586 851 IPR001245 GO:0004672|GO:0006468
Vivi5g04256 899 SUPERFAMILY Protein kinase-like (PK-like) 564 866 IPR011009 -
Vivi5g04256 899 SUPERFAMILY alpha-D-mannose-specific plant lectins 140 253 IPR036426 -
Vivi5g04256 899 SMART blect_4 94 222 IPR001480 -
Vivi5g04256 899 CDD PAN_AP_plant 416 495 - -
Vivi5g04256 899 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 75 846 - -
Vivi5g04256 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Vivi5g04256 899 ProSiteProfiles PAN/Apple domain profile. 415 496 IPR003609 -
Vivi5g04256 899 ProSitePatterns Protein kinases ATP-binding region signature. 589 611 IPR017441 GO:0005524
Vivi5g04256 899 Gene3D - 82 220 IPR036426 -
Vivi5g04256 899 Gene3D Phosphorylase Kinase; domain 1 557 658 - -
Vivi5g04256 899 SMART ntp_6 416 495 IPR003609 -
Vivi5g04256 899 ProSiteProfiles Protein kinase domain profile. 583 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04256 899 ProSiteProfiles EGF-like domain profile. 356 394 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04256 Vivi-Chr5 139437356 139446955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04256 536 899 Receptor kinase-like Gene Family AT4G11530 51.475 6.24e-119 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04256 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04256 - - tpra:123918163 1383.62