Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04255 ATGTTACATAACAATTTGCTGCTTAACTCTTTGATTCTACTCCTTTTGACATTCTCTTTTTGCTCTTGTTCTACTGACACCATATCTACTGACAAGCCTATAAGAGATGGTGAGCTTATTGTTTCTAAATCTAAAACATTTGCACTTGGATTCTTCACTCCAGGAAAATCCACCTCTCGCTATGTTGGAATTTGGTACAACAATTTGCCAAATCAAACTGTTGTTTGGGTTGCCAACAGAGATACTCCCATCAATGACACTTCTGGAATCCTATCAATCGACCCGAGTGGAAATCTAGTACTCCACCATAACCGTAGCACCATTCCAATTTGGTCTTCCAATGTTTCGTTCCCACAATCACTAACAAATCACACCAGTGCTGTAATAGCTCAACTATCAGATATAGCAAACCTTGTTCTGAAGCTAAACAACACCGAAACTGTATTATGGGAAAGCTTTGATCATCCAACAGACACATGGCTTCCATATCAAACACTTGGTTTTGATAGAAAGAATAATCAAAGTTGGTTTCTCCAATCCTGGAAGACAGATGATGACCCTGGAAAAGGTTCATATACGTTAAACTTCAGCACTGTTGGTTTACCTCAGTTGTTTATGTACAACCATGACCTTTCTTGGTGGCGCGGGGGACATTGGAACGGAGAATTAATTGTAGGTCAACCTTATATGAAACGAGATATGTATAACATTTCTTTCGTTGAACATGACAACTATGTAGCACTCACCTATAACATGTTTGATACGTCTGTCATTCTTAGGATAGTGCTTCAGCAATCTGGGTTCTTTCAAGCATTCACGTGGGACAGTCATGAGAGTCAATGGAATCCGTACTGGTCTGAACCGACAGACCATTGTGATAACTATGGAACATGTGGATCAAACAGTAATTGTGATCCTTCGAACTTGGAGAACTTTAAGTGTACATGTTTACTTGGTTTTGAACCCAAATATCCACGTGATTGGTATGACAGTAGAGTCGGGTCAGGAGGATGTGTAAGGAAGAAAGGTGTATCTGTTTGTAGGAACGGAGAAGGGTTTGTCAAAGTTGTAAGCTTGAAAGTTCCTGATACATCTGTGGCAGTTGCAAAAGGTGGTTTAAGTTTGGAAGAATGTGAGAAAGAATGCTTGAGAAACTGCTCTTGTACTGCCTATGCCGTTGCTGATGTGACAAATGGTGGAAGTGGTTGTTTGGCATGGTATGGGGATTTAATGGACATTCAGAAACTTAGTAATCAAGGCCAAGATTTATTTTTACGCGTTGATGCAGTTGAGCTAGCCAATTACTACAAAAAAAGCAAAGGAATCCTTAATAAAAAGAAGTTGGCTGCAATTCTGGTAGCTTCTATTGTTGCAATTGTTCTCCTCCTCTCTTGTGTGTATTGCTGGCGGAAGAAAAAAGGAAAGGGTAAAATGATGCAGCAATTAAGCCAAGATTCCTCTGGAGAAGAGAATGGTGCTCAAATCAACATCCATCCAAATCTACCATTATTTGATTTTAAAACGATAATGACAGCTACAAAAAATTGTGGTCATGAGAACAAGCTAGGACAAGGTGGATTTGGCTCTGTCTATAAGGGTTGCTTGGTTAATGGACAAGAGATAGCAGTGAAAAGATTATCCAAAACTTCAGGTCAAGGCAAAGGAGAGTTTATAAATGAAGTTACACTCTTAGTTAAACTCCAACACAGAAATCTAGTGAGATTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGCTAGTTTATGAATACCTACCAAACAAAAGCTTAGACTTCTTTATATTCGATCAAAACCAAAGGTCATCATTGGGTTGGAGTAAGCGTTTTGAAATTATTTGTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATTTGAAAGCTAGCAATGTTCTCCTTGATGGCGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAAAACAAAAAGAGTGGTCGGAACATATGGATATATGGCCCCGGAATATGCAATGGAGGGACGATACTCAACAAAATCCGATGTCTTCAGTTATGGGATTTTGCTACTAGAAATTATTGCAGGACAAAGAAACACGCGCAATGAAACTGGAAGAGCATCCCCAAATTTAATTGGACATGTGTGGACACTATGGACAGAAGGAAAGGCCTTGGATACAATTGATCCAGCACTAAACCAGTCTTATCCTCCTGATATAGTTCTGAAATGCATTCAAATTGGACTCCTGTGTGTGCAAGAAAAAGCCATGAATAGACCATCAATGCTAGAAGTTGTTTTCATGCTATGCAATGAAACACCACTTTGTCAACCTCAAAAACCAGCATTCTTATTCAATCGCAGCCAAGAATTACAAGAGTTATCAATAAATGAATTAACAGAAACTACCGTCAGTGCTCGCTAA 2478 0.389 MLHNNLLLNSLILLLLTFSFCSCSTDTISTDKPIRDGELIVSKSKTFALGFFTPGKSTSRYVGIWYNNLPNQTVVWVANRDTPINDTSGILSIDPSGNLVLHHNRSTIPIWSSNVSFPQSLTNHTSAVIAQLSDIANLVLKLNNTETVLWESFDHPTDTWLPYQTLGFDRKNNQSWFLQSWKTDDDPGKGSYTLNFSTVGLPQLFMYNHDLSWWRGGHWNGELIVGQPYMKRDMYNISFVEHDNYVALTYNMFDTSVILRIVLQQSGFFQAFTWDSHESQWNPYWSEPTDHCDNYGTCGSNSNCDPSNLENFKCTCLLGFEPKYPRDWYDSRVGSGGCVRKKGVSVCRNGEGFVKVVSLKVPDTSVAVAKGGLSLEECEKECLRNCSCTAYAVADVTNGGSGCLAWYGDLMDIQKLSNQGQDLFLRVDAVELANYYKKSKGILNKKKLAAILVASIVAIVLLLSCVYCWRKKKGKGKMMQQLSQDSSGEENGAQINIHPNLPLFDFKTIMTATKNCGHENKLGQGGFGSVYKGCLVNGQEIAVKRLSKTSGQGKGEFINEVTLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDQNQRSSLGWSKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDGAMNPKISDFGMARIFGEDEIQAKTKRVVGTYGYMAPEYAMEGRYSTKSDVFSYGILLLEIIAGQRNTRNETGRASPNLIGHVWTLWTEGKALDTIDPALNQSYPPDIVLKCIQIGLLCVQEKAMNRPSMLEVVFMLCNETPLCQPQKPAFLFNRSQELQELSINELTETTVSAR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04255 825 CDD PAN_AP_plant 348 427 - -
Vivi5g04255 825 CDD B_lectin 31 156 IPR001480 -
Vivi5g04255 825 CDD STKc_IRAK 522 789 - -
Vivi5g04255 825 Gene3D Hepatocyte Growth Factor 345 425 - -
Vivi5g04255 825 ProSiteProfiles Bulb-type lectin domain profile. 25 153 IPR001480 -
Vivi5g04255 825 SMART blect_4 31 156 IPR001480 -
Vivi5g04255 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 153 - -
Vivi5g04255 825 ProSiteProfiles EGF-like domain profile. 288 326 IPR000742 -
Vivi5g04255 825 Gene3D Transferase(Phosphotransferase) domain 1 592 797 - -
Vivi5g04255 825 Pfam Protein tyrosine and serine/threonine kinase 519 784 IPR001245 GO:0004672|GO:0006468
Vivi5g04255 825 Gene3D Phosphorylase Kinase; domain 1 491 591 - -
Vivi5g04255 825 SMART serkin_6 519 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04255 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Vivi5g04255 825 SMART ntp_6 348 427 IPR003609 -
Vivi5g04255 825 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Vivi5g04255 825 ProSiteProfiles PAN/Apple domain profile. 347 428 IPR003609 -
Vivi5g04255 825 SUPERFAMILY Protein kinase-like (PK-like) 499 803 IPR011009 -
Vivi5g04255 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 795 - -
Vivi5g04255 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 187 IPR036426 -
Vivi5g04255 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 479 591 - -
Vivi5g04255 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Vivi5g04255 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 779 - -
Vivi5g04255 825 Pfam D-mannose binding lectin 73 182 IPR001480 -
Vivi5g04255 825 Gene3D - 18 153 IPR036426 -
Vivi5g04255 825 Pfam PAN-like domain 347 413 IPR003609 -
Vivi5g04255 825 ProSiteProfiles Protein kinase domain profile. 516 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04255 825 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04255 Vivi-Chr5 139431668 139436292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04255 458 815 Receptor kinase-like Gene Family AT3G45860 52.044 1.72e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04255 PK_Tyr_Ser-Thr 4.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04255 - - tpra:123918163 1364.36