Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04254 ATGGACTCTGCAAATAATCTTCTCTACCTTCTCATAACCCAAAATCATTGCCTGCTAAACTCTTTCCTTCTACTCCTTTTGACATTCTCTTTATGCTCTTGTTCTACTGATACCATATCTATTCACAATCCAATAACAGATGGCGGTGACCTTCTCATTTCCAAATCTAAAACATTTGCTCTTGGATTCTTCACTCCTGAAAAATCCACTTCTCGCTATGTTGGAATTTGGTACTACAACTTGCCAATCCAAACTGTTGTTTGGGTTGCAAACAGAGATACTCCCATCAATGAAACTTCTGGCATTCTATCAATCGATCCGAGTGGAAATCTAGTACTCCACCATAACCTTAGCACCATTCCCATTTGGTCTACCAATGTTTCATTACCACAATCACTAACAAATAACAATAACACTTCTGTTATAGCTCAACTATCAGATTTAGCGAACCTTGTTCTCATGCTTAACAACACCAAAACAGTCTTATGGGAAAGCTTTAATCATCCAACAGACACCTGGCTTCCTTATCAAAGACTTGGTTTTGATAGAAAGAATAATCAAAACCGGTTCCTTCAATCCTGGAAGACAGATGCTGACCCTGGAAAAGGTTCATTCACAGTGAACTTCACTACCATTGGTAAACCTCAGTTGTTTATGTACAACCATGATGTTCCTTGGTGGCGTGGGGGACATTGGAACGGAGAGTTAATTGTAGGTCAACCTTATATGAAACGAGATATGCCCTTTTGTAACATTTCTTTAGTTGAAGATAACAACTATGTAGCACTCACATATAACATGTATGATACGTCCGTCATTCTTAGGATAGTGCTTCAGCAATCTGGGTTCTTTAAAGCATTCACGTGGGACAGTCAAGAGAGTCAATGGAACCAGTACTGGTCTGAACCAACAAACCAATGTGATAACTATGGAACATGTGGATCAAACAGCAATTGTGATCCTTTGAATTTGGAGAGCTTTAAGTGTTCTTGTTTACCAGGCTTTGAACCCAAATTTCCACGTGATTGGTATGACAGTAGAGACGGGTCAGGAGGATGTGTAAGGAAGAAAGGTGTATCTGTTTGTGGGAGTGGAGAAGGGTTTGTCAAAGTGTTAAGCTTGAAAGTTCCTGATACATCAGTGGCGGTTGCTAAAGGTGGATTAAGTTTGGAAGAATGTGAGAAAGAATGCTTGAGAAACTGCTCTTGTGCTGCCTATGCAGCCGTTGATGTGAGAAATGGTGGAAGTGGGTGTTTGGCATGGTATGGGGATTTAATGGACATTCAGAAACTTAATAATCAAGGACAAGATTTGTTATTACGCGTCGATAAATTTGAACTAGCCAATTACTACAAAAAACGCAAAGGAGTCCTTGATAAAAAAAGAATGGCTGCAATTCTGGTAGCTTCTATTGTTGCAATAGTTCTCCTCCTCTCGTGTGTATATTGCAGGCGGAAGATACAAAGAAAGGATAAAATAATGCGGCAATTAAACCAAAATTCTTCTGGAGAAGAGAACAATCTTCAAATAATGACACATTCAGATCTACCATTTTTCAATTTTAAAACGATAATGACAGCTACAAGAAATTGTGGTCATGAGAATAAGCTGGGACAAGGTGGATTTGGCTCTGTCTATAAGGGTTGCTTGGTTAATGGACAAGAGATAGCAGTGAAAAGATTATCCAAAAATTCAGGTCAAGGCAAAGGAGAGTTTATAAATGAAGTTACACTTTTAGTTAAACTCCAACACAGAAATCTTGTGAGATTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGCTAGTTTACGAATATCTACCAAACAAAAGCCTAGACTTCTTTATATTCGATCAAATCCAAAGGTCGTCCTTGGATTGGGGTAAGCGTTTTGAGATTATTTGTGGGATTGCTCGAGGTGTATTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTGAAAGCCAGCAATGTTCTCCTTGATGGTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAGATCCAAGCAAGAACAAAAAGAGTTGTCGGAACGTATGGATATATGGCACCGGAATATGCAATGGAAGGACGATATTCAACAAAATCTGATGTCTTCAGCTATGGAGTCTTGCTACTAGAAATTATTGCTGGACAAAGAAACTCACATAGTGAAAAAGAAAGATCCTCCCCTAATTTAATTGGACATGTGTGGACACTATGGACAGAGGGAAGACCCTTGGATATAGTTGATCCAACACTAAACCAGTTTTATCCCTCTGCTATTGTTCTGAGATGCATTCAAATTGGACTCTTGTGCGTGCGAGAAATTGCCATGAATAGACCATCAATGTTGGAAGTTGTTTTCATGCTATCCAATGAAACACCTCTTTCCCCACCTCAAAAACCAGCATTTTTATTCAACGGCAACAAAGATTTGGAAGAGTCTTCAACATCAGGAGGAGGTTCCTCGATAAATGAATTAACAGAAACTACCCTTATTGCTCGTTAA 2544 0.388 MDSANNLLYLLITQNHCLLNSFLLLLLTFSLCSCSTDTISIHNPITDGGDLLISKSKTFALGFFTPEKSTSRYVGIWYYNLPIQTVVWVANRDTPINETSGILSIDPSGNLVLHHNLSTIPIWSTNVSLPQSLTNNNNTSVIAQLSDLANLVLMLNNTKTVLWESFNHPTDTWLPYQRLGFDRKNNQNRFLQSWKTDADPGKGSFTVNFTTIGKPQLFMYNHDVPWWRGGHWNGELIVGQPYMKRDMPFCNISLVEDNNYVALTYNMYDTSVILRIVLQQSGFFKAFTWDSQESQWNQYWSEPTNQCDNYGTCGSNSNCDPLNLESFKCSCLPGFEPKFPRDWYDSRDGSGGCVRKKGVSVCGSGEGFVKVLSLKVPDTSVAVAKGGLSLEECEKECLRNCSCAAYAAVDVRNGGSGCLAWYGDLMDIQKLNNQGQDLLLRVDKFELANYYKKRKGVLDKKRMAAILVASIVAIVLLLSCVYCRRKIQRKDKIMRQLNQNSSGEENNLQIMTHSDLPFFNFKTIMTATRNCGHENKLGQGGFGSVYKGCLVNGQEIAVKRLSKNSGQGKGEFINEVTLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDQIQRSSLDWGKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDGAMNPKISDFGMARIFGEDEIQARTKRVVGTYGYMAPEYAMEGRYSTKSDVFSYGVLLLEIIAGQRNSHSEKERSSPNLIGHVWTLWTEGRPLDIVDPTLNQFYPSAIVLRCIQIGLLCVREIAMNRPSMLEVVFMLSNETPLSPPQKPAFLFNGNKDLEESSTSGGGSSINELTETTLIAR 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04254 847 SMART serkin_6 534 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04254 847 Pfam Protein tyrosine and serine/threonine kinase 534 732 IPR001245 GO:0004672|GO:0006468
Vivi5g04254 847 Gene3D Phosphorylase Kinase; domain 1 491 606 - -
Vivi5g04254 847 Gene3D - 30 167 IPR036426 -
Vivi5g04254 847 ProSiteProfiles Protein kinase domain profile. 531 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04254 847 ProSitePatterns Protein kinases ATP-binding region signature. 537 559 IPR017441 GO:0005524
Vivi5g04254 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 31 166 - -
Vivi5g04254 847 Pfam S-locus glycoprotein domain 227 339 IPR000858 GO:0048544
Vivi5g04254 847 CDD STKc_IRAK 537 802 - -
Vivi5g04254 847 CDD B_lectin 43 169 IPR001480 -
Vivi5g04254 847 PIRSF SRK 9 847 IPR024171 GO:0004674
Vivi5g04254 847 ProSiteProfiles EGF-like domain profile. 303 341 IPR000742 -
Vivi5g04254 847 Gene3D Transferase(Phosphotransferase) domain 1 607 809 - -
Vivi5g04254 847 SMART ntp_6 363 442 IPR003609 -
Vivi5g04254 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 607 810 - -
Vivi5g04254 847 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 793 - -
Vivi5g04254 847 MobiDBLite consensus disorder prediction 825 847 - -
Vivi5g04254 847 Gene3D Hepatocyte Growth Factor 360 447 - -
Vivi5g04254 847 SUPERFAMILY Protein kinase-like (PK-like) 516 816 IPR011009 -
Vivi5g04254 847 ProSiteProfiles Bulb-type lectin domain profile. 36 166 IPR001480 -
Vivi5g04254 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Vivi5g04254 847 CDD EGF_CA 305 338 - -
Vivi5g04254 847 Pfam D-mannose binding lectin 85 195 IPR001480 -
Vivi5g04254 847 ProSiteProfiles PAN/Apple domain profile. 362 443 IPR003609 -
Vivi5g04254 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 495 606 - -
Vivi5g04254 847 SMART blect_4 42 169 IPR001480 -
Vivi5g04254 847 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 200 IPR036426 -
Vivi5g04254 847 Pfam PAN-like domain 362 428 IPR003609 -
Vivi5g04254 847 CDD PAN_AP_plant 362 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04254 Vivi-Chr5 139426635 139431533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04254 483 847 Receptor kinase-like Gene Family AT4G11530 52.406 1.31e-121 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04254 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04254 - - tpra:123918163 1359.36