Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04249 ATGGATTCTGCTAAAAATCTTCTCTATCTTGTTACATCCCAAAATCATAAACACAAGTTTTGGTTGCTTATTAACTCTTTGATTCTACTCCTTAACTTCTCTTTTTCCTCTTGTTTTTCTGATACCTTAACTACTGACAAGCCTATAAGAGACGGTGAGCTCCTTGTTTCTAAATCTAAAACGTTTGCACTTGGATTCTTCACTCCTGGAAAATCCACCTCTCGCTATGTTGGAATTTGGTACTACAATTTGCCAATCCAAACTGTTGTTTGGGTTGCAAATAGAGATAGTCCGATCAATGATACTTCCGGAATTCTATCAATCAACCCGAGTGGAAATCTAGAACTCCACCACAACCTTAGCACCATTCCCATTTGGTCCACTAATGTTTCATTACCACAATCACGAACAAATAGCAGCAGTGTTGTTATAGCTCAACTATCGGATATAGCAAACTTTGTTCTGATGGTAAACAGCACCAAAACTGTCATCTGGGAAAGCTTTAATTATCCCACAGACACCATGCTTCCATATCTAAAGGTTGGTTTTGATAGAAAAACTAATCAAAGCTGGTTCCTTCAATCATGGAAGACAGATGAGGACCCTGGAAAAGGAGCATTTACTATTAAGTTCAGCACCATTGGCAAACCTCAGGTGTTTATGTACAACCGGAACCTTCCTTGGTGGCGTGGTGGACCATGGAATGGAGAACTTTTTGCAGGTATACCTAATATGAAACGAGATATGGCCACCTTTAACGTTTCTTATGTTGAAGATGACAACTATTCAGCTCTCTCATTTAACATGTTTGATAAGTCTGTCATTACTAGGATAGTGGTTCAACAATCTGGTTTCTTTCAAACATTCACATGGAACAGTCAAAAGAGTCAATGGAACCGCTACTGGTCTGAACCAACAGACCAATGTGATAACTATGGAACGTGTGGATCAAACAGTAATTGTGACCCTTTGAACTTTGACGACTTTAAGTGTACTTGTTTACTTGGTTTTGAACCAAAACTTCCACGTGATTGGTATGAGAGTAGAGATGGGTCAGGAGGGTGTGTTAGGAATAAAAATGCATCTGTTTGTAGGAATGGAGAAGGGTTTGTCAAAGTTGTAAACTTGAAAGTTCCTGATACATCTGTGGCAGTTGCAAAAGGTGGTTTAAGTTTGGAAGAATGTGAGAAAGAATGCTTGAGAAACTGCTCTTGTGCTGCCTATGCACCTGCTGATGTGAGGAATGGTGGAAGTGGGTGTTTGGCATGGTATGGGGATTTAATGGATATTCAAAAACTTAGTGATCAAGGCCAGGATTTGTTTTTACGCGTCGATAAAGTTGAACTAGCTAATTACTACAACAAAAGCAAAGGAGTCCTTGATAAAAAGAGGTTGGCTGCAATTCTGGTAGCTTCTATAATTGCAATTGTCCTTCTCTTTTCCTATGTGTATTGCTTGTGGAATAAAAATAGGAAAGATAAACTGATGCGGCAATTAAACCAAGATTCCTCTGGAGAAGAGAACGGTGCTCAAAGCAACACACATCCAAATCTACCATTTTTCAGCTTTAGAACGATAACAACGGCTACAAGAAATTTTAGTCATGAGAATAAGCTAGGGCAAGGTGGATTTGGTTCTGTCTATAAGGGTTGCTTAGTTAATGGACAAGAGATAGCAGTAAAAAGATTGTCAAAAGATTCAGGTCAAGGCAAAAAAGAGTTTAAAAATGAAGTTACACTTTTAGTGAAACTTCAACACAGGAATCTAGTGAGGTTGCTTGGTTGTTGCTTTGAGAAAGAAGAACGAATGCTAATTTATGAATACCTACCAAACAAAAGTCTAGACTTCTTTATATTTGATCAAACCCAAAGATCATCATTGGATTGGGGTAAGCGTTTTGAAATCATTTGTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCTAGCAACGTTCTCCTTGATGCTGCAATGAATCCTAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAGAACAAAAAGAGTGGTTGGAACATATGGATATATGGCACCAGAATATGCAATGGAAGGACGATATTCAACAAAATCCGATGTCTTCAGTTACGGGGTCTTGCTACTAGAAATTGTTGCTGGACAAAGAAACACACATTGTGAAACAGGAAGAGCATCCCCAAACTTAATTGGACATTTCTAA 2253 0.3826 MDSAKNLLYLVTSQNHKHKFWLLINSLILLLNFSFSSCFSDTLTTDKPIRDGELLVSKSKTFALGFFTPGKSTSRYVGIWYYNLPIQTVVWVANRDSPINDTSGILSINPSGNLELHHNLSTIPIWSTNVSLPQSRTNSSSVVIAQLSDIANFVLMVNSTKTVIWESFNYPTDTMLPYLKVGFDRKTNQSWFLQSWKTDEDPGKGAFTIKFSTIGKPQVFMYNRNLPWWRGGPWNGELFAGIPNMKRDMATFNVSYVEDDNYSALSFNMFDKSVITRIVVQQSGFFQTFTWNSQKSQWNRYWSEPTDQCDNYGTCGSNSNCDPLNFDDFKCTCLLGFEPKLPRDWYESRDGSGGCVRNKNASVCRNGEGFVKVVNLKVPDTSVAVAKGGLSLEECEKECLRNCSCAAYAPADVRNGGSGCLAWYGDLMDIQKLSDQGQDLFLRVDKVELANYYNKSKGVLDKKRLAAILVASIIAIVLLFSYVYCLWNKNRKDKLMRQLNQDSSGEENGAQSNTHPNLPFFSFRTITTATRNFSHENKLGQGGFGSVYKGCLVNGQEIAVKRLSKDSGQGKKEFKNEVTLLVKLQHRNLVRLLGCCFEKEERMLIYEYLPNKSLDFFIFDQTQRSSLDWGKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQARTKRVVGTYGYMAPEYAMEGRYSTKSDVFSYGVLLLEIVAGQRNTHCETGRASPNLIGHF 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04249 750 Pfam PAN-like domain 364 430 IPR003609 -
Vivi5g04249 750 Pfam Protein tyrosine and serine/threonine kinase 535 732 IPR001245 GO:0004672|GO:0006468
Vivi5g04249 750 SMART serkin_6 533 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04249 750 SUPERFAMILY Protein kinase-like (PK-like) 511 738 IPR011009 -
Vivi5g04249 750 Gene3D Phosphorylase Kinase; domain 1 507 608 - -
Vivi5g04249 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Vivi5g04249 750 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 28 735 - -
Vivi5g04249 750 SMART blect_4 46 171 IPR001480 -
Vivi5g04249 750 Gene3D - 34 169 IPR036426 -
Vivi5g04249 750 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 35 168 - -
Vivi5g04249 750 ProSiteProfiles PAN/Apple domain profile. 364 445 IPR003609 -
Vivi5g04249 750 Gene3D Transferase(Phosphotransferase) domain 1 609 748 - -
Vivi5g04249 750 Pfam D-mannose binding lectin 88 197 IPR001480 -
Vivi5g04249 750 SMART ntp_6 365 444 IPR003609 -
Vivi5g04249 750 Gene3D Hepatocyte Growth Factor 361 442 - -
Vivi5g04249 750 MobiDBLite consensus disorder prediction 501 518 - -
Vivi5g04249 750 Pfam S-locus glycoprotein domain 229 340 IPR000858 GO:0048544
Vivi5g04249 750 ProSitePatterns Protein kinases ATP-binding region signature. 539 561 IPR017441 GO:0005524
Vivi5g04249 750 CDD PAN_AP_plant 365 444 - -
Vivi5g04249 750 PIRSF SRK 13 750 IPR024171 GO:0004674
Vivi5g04249 750 ProSiteProfiles EGF-like domain profile. 305 343 IPR000742 -
Vivi5g04249 750 MobiDBLite consensus disorder prediction 499 518 - -
Vivi5g04249 750 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 497 608 - -
Vivi5g04249 750 FunFam Lectin-domain containing receptor kinase A4.3 609 749 - -
Vivi5g04249 750 SUPERFAMILY alpha-D-mannose-specific plant lectins 89 202 IPR036426 -
Vivi5g04249 750 CDD B_lectin 46 171 IPR001480 -
Vivi5g04249 750 ProSiteProfiles Bulb-type lectin domain profile. 40 168 IPR001480 -
Vivi5g04249 750 ProSiteProfiles Protein kinase domain profile. 533 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04249 Vivi-Chr5 139409441 139412753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04249 454 735 Receptor kinase-like Gene Family AT4G23190 56.383 5.59e-103 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04249 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04249 - - tpra:123914661 1300.8