Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04248 ATGGATTCTGCTAAAAATCTTCTCTATCTTGTTACATCCCAAAATCATAAACACAAGTTTTGGTTGCTTATTAACTCTTTGATTCTACTCCTTAACTTCTCTTTTTCCTCTTGTTTTTCTGATACCTTAACTACTGACAAGCCTATAAGAGACGGTGAGCTCCTTGTTTCTAAATCTAAAACGTTTGCACTTGGATTCTTCACTCCTGGAAAATCCACCTCTCGCTATGTTGGAATTTGGTACTACAATTTGCCAATCCAAACTGTTGTTTGGGTTGCAAATAGAGATAGTCCGATCAATGATACTTCCGGAATTCTATCAATCAACCCGAGTGGAAATCTAGAACTCCACCACAACCTTAGCACCATTCCCATTTGGTCCACTAATGTTTCATTACCACAATCACGAACAAATAGCAGCAGTGTTGTTATAGCTCAACTATCGGATATAGCAAACTTTGTTCTGATGGTAAACAGCACCAAAACTGTCATCTGGGAAAGCTTTAATTATCCCACAGACACCATGCTTCCATATCTAAAGGTTGGTTTTGATAGAAAAACTAATCAAAGCTGGTTCCTTCAATCATGGAAGACAGATGAGGACCCTGGAAAAGGAGCATTTACTATTAAGTTCAGCACCATTGGCAAACCTCAGGTGTTTATGTACAACCGGAACCTTCCTTGGTGGCGTGGTGGACCATGGAATGGAGAACTTTTTGCAGGTATACCTAATATGAAACGAGATATGGCCACCTTTAACGTTTCTTATGTTGAAGATGACAACTATTCAGCTCTCTCATTTAACATGTTTGATAAGTCTGTCATTACTAGGATAGTGGTTCAACAATCTGGTTTCTTTCAAACATTCACATGGAACAGTCAAAAGAGTCAATGGAACCGCTACTGGTCTGAACCAACAGACCAATGTGATAACTATGGAACGTGTGGATCAAACAGTAATTGTGACCCTTTGAACTTTGACGACTTTAAGTGTACTTGTTTACTTGGTTTTGAACCAAAACTTCCACGTGATTGGTATGAGAGTAGAGATGGGTCAGGAGGGTGTGTTAGGAATAAAAATGCATCTGTTTGTAGGAATGGAGAAGGGTTTGTCAAAGTTGTAAACTTGAAAGTTCCTGATACATCTGTGGCAGTTGCAAAAGGTGGTTTAAGTTTGGAAGAATGTGAGAAAGAATGCTTGAGAAACTGCTCTTGTGCTGCCTATGCACCTGCTGATGTGAGGAATGGTGGAAGTGGGTGTTTGGCATGGTATGGGGATTTAATGGATATTCAAAAACTTAGTGATCAAGGCCAGGATTTGTTTTTACGCGTCGATAAAGTTGAACTAGCTAATTACTACAACAAAAGCAAAGGAGTCCTTGATAAAAAGAGGTTGGCTGCAATTCTGGTAGCTTCTATAATTGCAATTGTCCTTCTCTTTTCCTATGTGTATTGCTTGTGGAATAAAAATAGGAAAGATAAACTGATGCGGCAATTAAACCAAGATTCCTCTGGAGAAGAGAACGGTGCTCAAAGCAACACACATCCAAATCTACCATTTTTCAGCTTTAGAACGATAACAACGGCTACAAGAAATTTTAGTCATGAGAATAAGCTAGGGCAAGGTGGATTTGGTTCTGTCTATAAGGGTTGCTTAGTTAATGGACAAGAGATAGCAGTAAAAAGATTGTCAAAAGATTCAGGTCAAGGCAAAAAAGAGTTTAAAAATGAAGTTACACTTTTAGTGAAACTTCAACACAGGAATCTAGTGAGGTTGCTTGGTTGTTGCTTTGAGAAAGAAGAACGAATGCTAATTTATGAATACCTACCAAACAAAAGTCTAGACTTCTTTATATTTGATCAAACCCAAAGATCATCATTGGATTGGGGTAAGCGTTTTGAAATCATTTGTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCTAGCAACGTTCTCCTTGATGCTGCAATGAATCCTAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAGAACAAAAAGAGTGGTTGGAACATATGGATATATGGCACCAGAATATGCAATGGAAGGACGATATTCAACAAAATCCGATGTCTTCAGTTACGGGGTCTTGCTACTAGAAATTGTTGCTGGACAAAGAAACACACATTGTGAAACAGGAAGAGCATCCCCAAACTTAATTGGACATGTGTGGACACTATGGACAGAGGGAAGACCCTTGGATATAGTTGATCTAGTACTAAACCAGTCTTATCCTGCTGATGTAGTTCTAAAATGCATTCAAATTGGACTCCTGTGTGTGCAAGAAAATGCCATGAATAGACCATCAATGTTAGAAGTTGTTTTGATGCTAGCCAATGAAACAACTCTCTTCCCACCTCAAAAGCCTGCATTTTTATTAATTGGAAACCAAGTTTTGCAAGAGTCTTCAACATCAGGAGGAAGTTCTTCAATAAATGAATTAACAGAAACTACCATTAGTGCTCGTTAA 2550 0.3827 MDSAKNLLYLVTSQNHKHKFWLLINSLILLLNFSFSSCFSDTLTTDKPIRDGELLVSKSKTFALGFFTPGKSTSRYVGIWYYNLPIQTVVWVANRDSPINDTSGILSINPSGNLELHHNLSTIPIWSTNVSLPQSRTNSSSVVIAQLSDIANFVLMVNSTKTVIWESFNYPTDTMLPYLKVGFDRKTNQSWFLQSWKTDEDPGKGAFTIKFSTIGKPQVFMYNRNLPWWRGGPWNGELFAGIPNMKRDMATFNVSYVEDDNYSALSFNMFDKSVITRIVVQQSGFFQTFTWNSQKSQWNRYWSEPTDQCDNYGTCGSNSNCDPLNFDDFKCTCLLGFEPKLPRDWYESRDGSGGCVRNKNASVCRNGEGFVKVVNLKVPDTSVAVAKGGLSLEECEKECLRNCSCAAYAPADVRNGGSGCLAWYGDLMDIQKLSDQGQDLFLRVDKVELANYYNKSKGVLDKKRLAAILVASIIAIVLLFSYVYCLWNKNRKDKLMRQLNQDSSGEENGAQSNTHPNLPFFSFRTITTATRNFSHENKLGQGGFGSVYKGCLVNGQEIAVKRLSKDSGQGKKEFKNEVTLLVKLQHRNLVRLLGCCFEKEERMLIYEYLPNKSLDFFIFDQTQRSSLDWGKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQARTKRVVGTYGYMAPEYAMEGRYSTKSDVFSYGVLLLEIVAGQRNTHCETGRASPNLIGHVWTLWTEGRPLDIVDLVLNQSYPADVVLKCIQIGLLCVQENAMNRPSMLEVVLMLANETTLFPPQKPAFLLIGNQVLQESSTSGGSSSINELTETTISAR 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04248 849 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 28 796 - -
Vivi5g04248 849 Gene3D Transferase(Phosphotransferase) domain 1 609 811 - -
Vivi5g04248 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 89 202 IPR036426 -
Vivi5g04248 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 609 812 - -
Vivi5g04248 849 Pfam PAN-like domain 364 430 IPR003609 -
Vivi5g04248 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Vivi5g04248 849 SMART blect_4 46 171 IPR001480 -
Vivi5g04248 849 ProSiteProfiles Protein kinase domain profile. 533 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04248 849 PIRSF SRK 13 849 IPR024171 GO:0004674
Vivi5g04248 849 Pfam Protein tyrosine and serine/threonine kinase 535 801 IPR001245 GO:0004672|GO:0006468
Vivi5g04248 849 CDD STKc_IRAK 539 804 - -
Vivi5g04248 849 Gene3D Phosphorylase Kinase; domain 1 507 608 - -
Vivi5g04248 849 ProSiteProfiles PAN/Apple domain profile. 364 445 IPR003609 -
Vivi5g04248 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 497 608 - -
Vivi5g04248 849 SMART ntp_6 365 444 IPR003609 -
Vivi5g04248 849 MobiDBLite consensus disorder prediction 501 518 - -
Vivi5g04248 849 ProSitePatterns Protein kinases ATP-binding region signature. 539 561 IPR017441 GO:0005524
Vivi5g04248 849 SMART serkin_6 533 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04248 849 SUPERFAMILY Protein kinase-like (PK-like) 514 812 IPR011009 -
Vivi5g04248 849 MobiDBLite consensus disorder prediction 828 849 - -
Vivi5g04248 849 CDD PAN_AP_plant 365 444 - -
Vivi5g04248 849 Pfam S-locus glycoprotein domain 229 340 IPR000858 GO:0048544
Vivi5g04248 849 ProSiteProfiles EGF-like domain profile. 305 343 IPR000742 -
Vivi5g04248 849 MobiDBLite consensus disorder prediction 499 518 - -
Vivi5g04248 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 35 168 - -
Vivi5g04248 849 Pfam D-mannose binding lectin 88 197 IPR001480 -
Vivi5g04248 849 CDD B_lectin 46 171 IPR001480 -
Vivi5g04248 849 Gene3D - 34 169 IPR036426 -
Vivi5g04248 849 ProSiteProfiles Bulb-type lectin domain profile. 40 168 IPR001480 -
Vivi5g04248 849 Gene3D Hepatocyte Growth Factor 361 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04248 Vivi-Chr5 139409441 139414223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04248 521 849 Receptor kinase-like Gene Family AT4G11530 54.896 5.26e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04248 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04248 - - tpra:123914661 1447.95