Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04247 ATGCTCACTCTCACCACCCTCCACAAACTCTTCCTCTTTTCTTTCTCCACTTCAATCATTTTCTTCTCCACACCTTCAATCTCTGTTTCTTCTAACACCTTAACAACAACCCAAATCCTTACAATCAACCAAACCCTCTTGTCCCCAAACGGCATCTTCCAACTCAGTTTCTTTTCATACACAAATTTCTCTTGGTACTTGGGAATACGTTACACCATAGATAATGACAGAACAGTGGTTTGGGTTGCAAACAGAAACACCCCAATTCAGAATCCCAATTCTTTTCTCAGATTAACCAACACAGGAAGCCTCTTTATCATAGATCAATCCAATAAAACCATCTGGGCCAGTATTCAAATCAATAAAAATTCAACCTTTAACAGCAAAAACCCAGTTCTTCAGCTTTTGGATTCTGGGAATTTGATTGTAACAGAATCAACAGAATCACCAAATGAAAACGACCCAACAAAAATCCTATGGCAAAGTTTCGATTTTCCAACCGACACTTTGTTACCTGGCATGAAACTCGGTTGGAATTTCGACACAGACACAGAAACATACATAAATTCATGGAAGGTAACAGAACAAGACCCTTCCAATGGAGACATATCATTCAAGATGGATTATCAAGGTATCCCAGAGATTTTCATGTTGAACAAAAACAGAAGAATCTACAGAAGTGGACCATGGAATGGTAAAAGATTCAGCGGTGTACCGGAGATGCAACCAGTAACCGATTCGATTCAGTTCAGTTTCGTCGAGAACGAACACGAGGTTTACTACACATTCACAATTGGGAAAGAGTCCTTATATTCAAGACTCAGTGTGAGTGCATCAGGTGAACTTCAAAGACTGACATGGATAAATAGCAGAAACTTTTGGAATAAATTCTGGTATGCACCAAAAGACCAATGTGACAATTACAAAGAGTGTGGTCCATTTGGTGTGTGTGACACAAACGGTTCACCTGTTTGTAGTTGTATAAAAGGGTTTAGGCCCAAGAATCATCAAGCGTGGAGTTTGAGAGATGGATCTGATGGGTGTTTGAGGAACAATGAACTGGATTGTGAGAGTGATAGGTTTTTGCGTATGGTGAATGTGAAGTTACCTGAGACTAGTAGGGTTTTTGTGAATAGGAGTATGGGGATTTTGGAGTGTGGTGAGATGTGTAAGAGGAATTGTTCTTGTATTGGTTATGGGAATGTTGAGGTTGTGAATGGTGGAAGTGGTTGTGTTATGTGGGTGGATGAATTGGTTGATATTAGAGTTTATCCTGCTGGGGGTCAAGATTTGTTTGTCAGATTAGCAGCTTCTGATGTAGATGATGATGTGCTAAGAGAAAGTTCTGGTCACAAGACAGCTAAGGTTATAGGCATTATAGTTGGTGGTGCAGCCATTATATTTCTGGTGTTAGGAATATGTTTCTTGTGGAGGAAGAAAAAATTACAGTGTCTATTGAATTTGAAAGAGAAAAGAGAAAGAAGAGGTTCATTGGAAAGAAGTCAGGATTTGCTTATGACTGATGGAGTGTTTACGAGTAATAGGGAACAGTCAAATGAAAATAACATGGATGAACTAGAATTGCCATTCTTTGATTTTAATACCATAACAATGGCAACAAATAATTTCTCTCATGAGAATAAACTTGGACAAGGAGGCTTTGGTATTGTTTACAAAGGTAGGTTAATGGAAGGTCAGGAAATCGCTGTGAAGAGGTTATCGAAAAATTCTGGCCAAGGTGTTGAAGAGTTTAAGAATGAGGTCAAGTTGATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTACTTGGTTGCAGCTTTCAAATGGATGAGAAGATGTTGGTGTATGAGTACATGGAAAATAGAAGCCTTGATGCCATTTTATTTGACAAGACTAAAAAATCCTCACTGGATTGGAAAACGCGCTTCAATATTATATGCGGAATAGCTAGAGGACTTCTTTATCTTCACCAAGATTCGAGATTTAGAATCATCCATAGAGATCTTAAGGCAAGCAACATTCTACTTGATAGAGAGATGAACCCAAAGATATCAGACTTCGGGATGGCTAGAATTTTTGGCACGGATCAAACAGAGGCAAATACAGTTAGAGTCGTTGGAACATATGGTTATATGTCTCCTGAATATGCTATGGATGGAATCTTCTCAGTGAAATCAGATGTTTTCAGTTTTGGCGTACTTGTGATGGAGATCGTAAGTGGAAAAAAGAACCGAGGTTTCTATTCAGCAAGCAAAGAATTGAATCTTCTTGGTCATAGTTGGAAGCTGTGGAAAGAAGAAAATGCCTTGGAATTAATTGATTCGTCGATTATTGATAATTCATATTTACCATCTGAGGTTCTTAGATGCATACAAGTTGGGCTATTATGTGTACAAGAGAGAGCAGAAGATAGACCAACAATGTCTTCAGTGGTTTTGATGTTGAGTAGTGAAACAGCAACAATAGCGCAGCCCAAAAATCCCGGATTTTGCCTAGGAAGCATTCCTATTGAAACTGATTCATCATCAAGTAAACAAGATGAATCTTGCAGTGTGAACCATGTTACTGTAACAATGGTAGATGGCAGATAG 2592 0.387 MLTLTTLHKLFLFSFSTSIIFFSTPSISVSSNTLTTTQILTINQTLLSPNGIFQLSFFSYTNFSWYLGIRYTIDNDRTVVWVANRNTPIQNPNSFLRLTNTGSLFIIDQSNKTIWASIQINKNSTFNSKNPVLQLLDSGNLIVTESTESPNENDPTKILWQSFDFPTDTLLPGMKLGWNFDTDTETYINSWKVTEQDPSNGDISFKMDYQGIPEIFMLNKNRRIYRSGPWNGKRFSGVPEMQPVTDSIQFSFVENEHEVYYTFTIGKESLYSRLSVSASGELQRLTWINSRNFWNKFWYAPKDQCDNYKECGPFGVCDTNGSPVCSCIKGFRPKNHQAWSLRDGSDGCLRNNELDCESDRFLRMVNVKLPETSRVFVNRSMGILECGEMCKRNCSCIGYGNVEVVNGGSGCVMWVDELVDIRVYPAGGQDLFVRLAASDVDDDVLRESSGHKTAKVIGIIVGGAAIIFLVLGICFLWRKKKLQCLLNLKEKRERRGSLERSQDLLMTDGVFTSNREQSNENNMDELELPFFDFNTITMATNNFSHENKLGQGGFGIVYKGRLMEGQEIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSFQMDEKMLVYEYMENRSLDAILFDKTKKSSLDWKTRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDREMNPKISDFGMARIFGTDQTEANTVRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVMEIVSGKKNRGFYSASKELNLLGHSWKLWKEENALELIDSSIIDNSYLPSEVLRCIQVGLLCVQERAEDRPTMSSVVLMLSSETATIAQPKNPGFCLGSIPIETDSSSSKQDESCSVNHVTVTMVDGR 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04247 863 ProSiteProfiles Protein kinase domain profile. 543 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04247 863 SMART serkin_6 543 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04247 863 CDD STKc_IRAK 549 815 - -
Vivi5g04247 863 Pfam PAN-like domain 356 421 IPR003609 -
Vivi5g04247 863 ProSitePatterns Protein kinases ATP-binding region signature. 549 571 IPR017441 GO:0005524
Vivi5g04247 863 Pfam Protein tyrosine and serine/threonine kinase 545 813 IPR001245 GO:0004672|GO:0006468
Vivi5g04247 863 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 806 - -
Vivi5g04247 863 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 509 618 - -
Vivi5g04247 863 Gene3D Phosphorylase Kinase; domain 1 516 618 - -
Vivi5g04247 863 ProSiteProfiles Bulb-type lectin domain profile. 31 156 IPR001480 -
Vivi5g04247 863 Pfam D-mannose binding lectin 78 192 IPR001480 -
Vivi5g04247 863 Pfam Domain of unknown function (DUF3403) 817 863 IPR021820 GO:0004674
Vivi5g04247 863 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 232 IPR036426 -
Vivi5g04247 863 CDD B_lectin 43 166 IPR001480 -
Vivi5g04247 863 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 619 823 - -
Vivi5g04247 863 Gene3D - 26 163 IPR036426 -
Vivi5g04247 863 Pfam Receptor serine/threonine kinase 499 533 IPR022126 GO:0004674
Vivi5g04247 863 CDD PAN_AP_plant 354 436 - -
Vivi5g04247 863 Pfam S-locus glycoprotein domain 225 335 IPR000858 GO:0048544
Vivi5g04247 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 664 676 IPR008271 GO:0004672|GO:0006468
Vivi5g04247 863 PIRSF SRK 3 863 IPR024171 GO:0004674
Vivi5g04247 863 SMART ntp_6 356 435 IPR003609 -
Vivi5g04247 863 SUPERFAMILY Protein kinase-like (PK-like) 521 815 IPR011009 -
Vivi5g04247 863 ProSiteProfiles PAN/Apple domain profile. 356 436 IPR003609 -
Vivi5g04247 863 Gene3D Transferase(Phosphotransferase) domain 1 619 827 - -
Vivi5g04247 863 SMART blect_4 37 166 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04247 Vivi-Chr5 139404435 139409275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04247 494 858 Receptor kinase-like Gene Family AT4G11530 54.054 6.41e-130 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04247 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04247 - - cam:101504189 1419.06