Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04242 ATGGGCAAGATCATAGGATTCAATGTTTCATTTTTTATGTTGTTGTTATTGTTTTTGTCTTTCCTATGTTTTTATCCTTTGTTTTTGCATGCTGCTTCCTCCATCACACAGAATGAATCTATCAAAGATGGTTCTACTTTGGTCTCAGAAGGTCTCAAATTCGAAATGGGTTTCTTCGGCTTAAACAACTCTTCAAGATACGTTGGAATTTGGTATCGCAACGTTTCGGTTTCAGCATACGTGTGGGTTGCAAACAGAGAAAATCCTATTAAAAACAGACAAGGTTCCATCACAATAAAAAAGGATGGTAACTTGGTAGTTCTTGATGGAGAGAACAACGAGGTTTGGTCAAGTAATATATCAGTTCCTATAAATAACTCGCAAGCTGTTCTTCGTAATGATGGAAACCTTATTCTTTCGGATAGAGAAACTAACAAGGAGATTTGGCAAACTTTTGAAGATCCAACTGATACATATCTTCCAGGTATGAAAGTTCCCGCGAGTAGCGGAGGTGGAATCGGGAAGGATCCTACCTTTCGTGCGTGGAAATCAGAGAAGGATCCTTCATTCGGAAAATACACGATGAGTGTTGATTCGGAAGCCTCACCACAGATAGTGATTATGAAAGGTGAGAAAAGAAGGTGGAGAAGTGGTTATTGGGATGGTAGAGTTTTCTCAGGTGTGCCAAATATGACAGGAAATTATCTTTATGGTTTTAGGCTTAACACGGACGATAAGGGAGAAAGGTATTTTGTTTATGAAGCATTGAATAGTAGTGATAAGATAAGGTTTCAGATTGCTTATGATGGATTTGAGAGACAATTCAGGTGGAATGAAAATGAAAAAAAATGGAATGTGATACAAAGTCTTCCTTATAAGAAGTGTGAGTTTTATAATTCATGTGGTAGTTTCGCAATATGTGATGAGTCTGATTCAGTTTTGTGTAAGTGCTTGAAAGGGTTTGAGCCAAAGGATATGATAAGTTGGAAAAATGGGAATTGGTCAAAAGGGTGTAAGAGGAAGAATCCATTGAAGGGTGAGAGAACTAGTACTAATAGTTCTGTTGGAGAAGATGGTTTTTTGGTGCAAAGGGGTTTGAAGTTGCCTGATTTTGCACATTTGGTTAATGCTGGTAATAGCGATGACTGTGAAAGAAATTGTCTGCAGAATAGTTCTTGTACCGCGTATGTAAACACTATTGGAATTGGGTGTATGGTTTGGTTTGGAGAGTTAGTTGATGTTCAAAGACTAGAAATTTATGGAAATACACTCAACATTCGGCTTTCCGATTCTGATCTAGATGATGCGAAGAAAAAGACCAAGATTTGGATAACATTAGCTGTTGTAATGGCGGTTATCTTTCTTGGAATTTTTGCATGGCTGCTATGGAGATTTAAGGGAAAACTCAAAGTCTCTTCGACTTCTTCTCTCAACAGAAACATTGGTAATGGAACAGTTTCTGAACCATCCAAAAGTACAAACTTATTAGTACCAGCAGAATTTTCAGGATCAGTTGATCCGAATTCGGAAGGGAGTCCTCTAAATAATGCAGAACTTTCATTCTTCAATTTTAGTAGCATTGTAATAGCAACAAACAATTTCTCAGAAGAAAATAAACTCGGACAAGGGGGATTCGGTCCTGTCTACAAGGGAAAGCTTCCAGGGGGAGAAGAAATCGCGGTAAAGAGGCTTTGTAGAAAGTCTAGCCAAGGTTCAGATGAGTTCAAGAATGAAATGATGCTAATAGCCAAATTACAACATAGAAATCTTGTTAGACTGTTAGGATGTTCAGTTCTAGAGGAAGAAAAGTTACTGGTATATGAATACATGCCAAACAAAAGTCTAGACTTTTTTTTATTTGATCCAGTCAAGCAAACAAAACTAGATTGGACTATACGTTCTGAAATCATCGAGGGTATTGCTAGAGGACTACTTTATCTGCACCGTGATTCACGGCTTAGAATAATTCATCGGGATCTAAAAGCAAGCAACATTTTGTTGGACGAAAATATGAATCCAAAAATATCAGACTTTGGCTTGGCAAGGATATTTGGTGGAAACCAAAATGAAGACAATACAACTAGAGTAGTTGGTACATATGGTTACATGTCTCCTGAATATGCGATGGAAGGTCTATTTTCAGTTAAATCTGATGTCTATAGTTTTGGCGTACTTCTACTAGAGATTGTGAGTGGTCGCAAAAACACTAGCTTTCGTGATTCTTATGATCCAAGTCTCATAGGATATGCATGGCGTCTATGGAATGAAGAGAGAGTGATGGAGCTTGTTGATCCTTCGATCCGTGATTCATGTAAAAAGAGTAAAGCATTGAGATGCATACACATAGGGATGTTATGTGTGCAAGATTCAGCATCTAATAGACCAAACATGTCCTCAGTGGTATTGATGCTGGAAAGTGAGGCAACAACTCTTCCATTGCCTATTCAACCTTTGTTTACTTCAATGAGGAGATATGATGATACTGAAGAATTTCATACCGAACCCTTTGAATCCTCAGTTGATCTTACAGTGACAGGGAGATAA 2544 0.3789 MGKIIGFNVSFFMLLLLFLSFLCFYPLFLHAASSITQNESIKDGSTLVSEGLKFEMGFFGLNNSSRYVGIWYRNVSVSAYVWVANRENPIKNRQGSITIKKDGNLVVLDGENNEVWSSNISVPINNSQAVLRNDGNLILSDRETNKEIWQTFEDPTDTYLPGMKVPASSGGGIGKDPTFRAWKSEKDPSFGKYTMSVDSEASPQIVIMKGEKRRWRSGYWDGRVFSGVPNMTGNYLYGFRLNTDDKGERYFVYEALNSSDKIRFQIAYDGFERQFRWNENEKKWNVIQSLPYKKCEFYNSCGSFAICDESDSVLCKCLKGFEPKDMISWKNGNWSKGCKRKNPLKGERTSTNSSVGEDGFLVQRGLKLPDFAHLVNAGNSDDCERNCLQNSSCTAYVNTIGIGCMVWFGELVDVQRLEIYGNTLNIRLSDSDLDDAKKKTKIWITLAVVMAVIFLGIFAWLLWRFKGKLKVSSTSSLNRNIGNGTVSEPSKSTNLLVPAEFSGSVDPNSEGSPLNNAELSFFNFSSIVIATNNFSEENKLGQGGFGPVYKGKLPGGEEIAVKRLCRKSSQGSDEFKNEMMLIAKLQHRNLVRLLGCSVLEEEKLLVYEYMPNKSLDFFLFDPVKQTKLDWTIRSEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEDNTTRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIVSGRKNTSFRDSYDPSLIGYAWRLWNEERVMELVDPSIRDSCKKSKALRCIHIGMLCVQDSASNRPNMSSVVLMLESEATTLPLPIQPLFTSMRRYDDTEEFHTEPFESSVDLTVTGR 847
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04242 847 SMART serkin_6 534 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04242 847 SMART ntp_6 355 428 IPR003609 -
Vivi5g04242 847 CDD B_lectin 38 155 IPR001480 -
Vivi5g04242 847 Pfam D-mannose binding lectin 80 171 IPR001480 -
Vivi5g04242 847 Gene3D - 28 152 IPR036426 -
Vivi5g04242 847 PIRSF SRK 7 846 IPR024171 GO:0004674
Vivi5g04242 847 ProSiteProfiles Bulb-type lectin domain profile. 32 152 IPR001480 -
Vivi5g04242 847 Pfam PAN-like domain 356 414 IPR003609 -
Vivi5g04242 847 CDD PAN_AP_plant 353 429 - -
Vivi5g04242 847 CDD STKc_IRAK 540 805 - -
Vivi5g04242 847 Pfam Protein tyrosine and serine/threonine kinase 537 802 IPR001245 GO:0004672|GO:0006468
Vivi5g04242 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 152 - -
Vivi5g04242 847 SMART blect_4 38 155 IPR001480 -
Vivi5g04242 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 610 812 - -
Vivi5g04242 847 SUPERFAMILY Protein kinase-like (PK-like) 520 834 IPR011009 -
Vivi5g04242 847 Gene3D Transferase(Phosphotransferase) domain 1 610 811 - -
Vivi5g04242 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 501 609 - -
Vivi5g04242 847 ProSiteProfiles Protein kinase domain profile. 534 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g04242 847 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Vivi5g04242 847 ProSiteProfiles PAN/Apple domain profile. 338 424 IPR003609 -
Vivi5g04242 847 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 795 - -
Vivi5g04242 847 Gene3D Phosphorylase Kinase; domain 1 505 609 - -
Vivi5g04242 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Vivi5g04242 847 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 222 IPR036426 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi5g04242 Vivi-Chr5 139378906 139383815 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04242 507 819 Receptor kinase-like Gene Family AT4G23230 60.828 1.65e-132 407
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g04242 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04242 - - cam:101504189 1342.02