Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04238 ATGGCGTCCTCACTCCCACACTTAGACGATGATTCCGTCTCCCCTTCCCCTCGCTCCGATCACTTCCAAGACGCTCCGCCACGTGTCCGCTTCATGTGTAGCTTCGGCGGCAAGATCCTCCCCCGTCCATCGGATAATCAACTCCGTTACGTCGGCGGCGATACTCGAATCGTCGCCGTCAATCGCTCTATTCCATTCTCCGCTTTAGTCCACAAACTCTCCAAACTCTGTGGCATGACCAACATAACTGCAAAGTACCAACTTCCAAACGAAGACCTAGACGCGTTGATCACCGTTACAACAGACGAAGACGTTGAGAACATGATAGACGAGTACGACCGCGTCTCACAGAATGAAAACCCGCGAGCGGCTCGGCTTCGCGTCTTCCTCTTCCCCGAAGGAGAAGACTCTCGAGCCAACAGTATCAGCTCGCTCTTAAACGGCTCTACTAAAAGAGAAAACTGGTTCATGGACGCTTTAAACGGTGGCGTTTCAGGACTCGAACGAGGTCGTTCAGAAGCTTCTTCTATGCTTTCTGAAGTACCTGATTATTTATTCGGGTTGGATAATAACTCCGAAGAAATTAACCAAAACCAAAACCTCCGTGAATCACGACCTAAGGAACGTCACCTTCTTCAACAAGATAACGTTTCGAATTCGGATCCGGGTTCTCCTGCTCCGGTTGTTTCTTCACCGTTTTGTTCAACTTCATCAGCGTTGAGTGTTCCTTCTATTCCGAATCTTCCACCAGTTAAAACCAAACTCGATAACCAGGTTTCTGATTTCAAAGAAAACCAAAATGAAACGGTTTTTCAACCGCAACTGAAACAGAATATTTACCAGATTAACCCTGCAGTACACTACCCCCACCCCCAACCACAAGCACAAACACAAGCTTCACAAGCACAAGAAGCTGCATATTCGGGTCATCATGCACAACCGGTCCCGGTTTACTATATTTCCGGTTCGGTTCAACCCGGAAATATGCCGATGCAACAGGTTCATTATCCATACGTTCAACAGCCTTATCATGCAGTTATGCAACCCCAGGTTCCAATTGGGTATCATCATATGGTTCCGGGTTCGGGTCAAGTGTATGGTGCGGGAATGAGGCATGTGGCCCCAGTGCAGCCCTACAGTCCCACTGCGGTGGTTCGTGATGGTTTGAAACAACAAGTGTATCAAGGTGTGCCGAACCCCGGCCCAGTTCCGGTTTACCATGCGATGGCAGTGACAGGTGGAGAAGAACAGCAAAGAGGTGGAACGGAGTTTGGAATGGGTCGTGGCACCAACCCGCCGAATAATTGA 1308 0.4924 MASSLPHLDDDSVSPSPRSDHFQDAPPRVRFMCSFGGKILPRPSDNQLRYVGGDTRIVAVNRSIPFSALVHKLSKLCGMTNITAKYQLPNEDLDALITVTTDEDVENMIDEYDRVSQNENPRAARLRVFLFPEGEDSRANSISSLLNGSTKRENWFMDALNGGVSGLERGRSEASSMLSEVPDYLFGLDNNSEEINQNQNLRESRPKERHLLQQDNVSNSDPGSPAPVVSSPFCSTSSALSVPSIPNLPPVKTKLDNQVSDFKENQNETVFQPQLKQNIYQINPAVHYPHPQPQAQTQASQAQEAAYSGHHAQPVPVYYISGSVQPGNMPMQQVHYPYVQQPYHAVMQPQVPIGYHHMVPGSGQVYGAGMRHVAPVQPYSPTAVVRDGLKQQVYQGVPNPGPVPVYHAMAVTGGEEQQRGGTEFGMGRGTNPPNN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04238 435 CDD PB1_UP2 32 131 - -
Vivi5g04238 435 MobiDBLite consensus disorder prediction 286 307 - -
Vivi5g04238 435 PANTHER OS05G0427100 PROTEIN-RELATED 11 342 - -
Vivi5g04238 435 SMART PB1_new 43 131 IPR000270 GO:0005515
Vivi5g04238 435 MobiDBLite consensus disorder prediction 415 435 - -
Vivi5g04238 435 SUPERFAMILY CAD & PB1 domains 44 140 - -
Vivi5g04238 435 MobiDBLite consensus disorder prediction 1 25 - -
Vivi5g04238 435 Gene3D - 49 132 - -
Vivi5g04238 435 MobiDBLite consensus disorder prediction 290 307 - -
Vivi5g04238 435 Pfam PB1 domain 45 132 IPR000270 GO:0005515
Vivi5g04238 435 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 48 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04238 Vivi-Chr5 139342394 139344213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04238 24 168 MAP Kinase Kinase Kinase AT5G57610 44.898 7.79e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04238 - - vvo:131602752 850.892