Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04237 ATGAAGAAAGAATCAGCATCGGCGAACGAGGAGGTTCTACCGGACAATCTCCGGTGCGGGAGAACCGACGGGAAGCAATGGCGGTGCAAGCGGAGAGTGATGGACGATCTAAAGCTCTGCGAGATTCACTACCTCCAAGGGAAGCATCGTCAGTACAGAGAGAAAGTTCCAGAGTCTCTGAAGCTTCAGAGGAAGCGGAAAAACGAGGGTGAAACTGTTGTTATCGACAATGCGGAAACGGAAGCAGCTAGGGCAGAGAGTAAGTTCAAAATGGAGCTGAGAAAGATCAAGAAGAAGAGGAAGTTCTCGGAGGATTCGGAAGCGTTAACTGATACTCCTTCTGCTTCCGCATCTGCATCTGCTCCTGCTACTGTTTCTGTTAGGAAGAGAACAATGAAGCAATGTGACACGCAATTGGATCTTATTAGAATGGTTCTGGAGAGGGAAGTTGAGAAGAGAAAAGGGAACAGTAGCAGTAACAACAAGAAGAAGAAGAAAAAGAAGAAAAAGGAGATTAAAACAGAAGAAGTGGAATTGCGGCACTATAATGAAGGGGAATTAAGGAAGGAGTTACCAAACGGGGTTATGGAAATATCTCCGGCTTTAATGCCACATGATTATAACAATGTGAGTTCTCATTGTGATGTGAAAGTTGGTGCTGACCATAAGATTGTAGCTGTAACGCCGCGTTACTTCAGGTCCAAGAATATTGATAGGGTGGCTGCTGGCAAGTTGCAGGTTATGCCTAATGGACCAAACTTGAAGAAGGGGAATACCAAGATGAAGAAGTGTCACTGGTGTCAGAGAAGTGATTCTGTGAATCTCGTTCAGTGTTCTAGCTGTCAAAAGGAGTTTTTCTGCTTTGGATGCATAAGAGAGCAGTATTTGGACACACGAAGCGAAGTTAAGAAGGCTTGTCCAGTTTGTCAAAGAACTTGCACATGTAAGGACTGTTTGGGAAGTCAATGTAACGACAGCGAAAGTAAGCCTTGTGTGACCGGTAAAATTAGAGTTGATAGAATACTGCATTTTCATTATTTGATCTGCATGCTCCTTCCGGTACTAAAGCGAATAAGTGAAGACCGGGAAACTGAGCTAGAAACAAAAGCAAAATTTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTACAACGAAAATATCAATTGCAATCACTGCAGAATACCCGTCCTGGATCTCCATAGAAGCTGTGTTAGTTGTTCGTATAGCCTATGCTTAAGTTGTTGTGAGAAATTATGTCCAGGAAGAACTTCGGGAGAAATTAACTCATCTATGCTGAAGCAACCTGATCAGATGGACCCCTGTGGTGACAATGAGAGCCGTATTTTGGATCAGAATGGCATCTCTTGTGATAATTTAACTGGTATTTCAACATTGCCTGAGCGGAGAAATTGTAATGATATTGAAAAACTATCATGCCCTCCTACGGAACTTGGTGGTTGTGGTACAGGCATGCTTGATTTAAAATGCATTTTTCCCCCGACTTTGCTCAAAGAGATGGAAATAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCCGAAACTTTGGATAAAAGTTCAAGCTGCTCACTGTGTTTTGACACTGACCTCAACACTAACCGATATAATCAGTTGCAGAAATCAGCTGAGAGAGAAGATTCATCGGACAATTGCTTGTTTTGTCCCACAGTTTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTGGTCCAAGATGTGCTCCAGAGTTCATCAAACCTCAGTTGGAATCCACTGTTCATGTTCTGTACTTATCTCGAGCAGAGCATTACAAAGTATGAGAATAATAAGGAGTTACTTGAATCCTGTTTGGATTGGTGTGAGGTGGAAATAAACATTAGGCAGTATTTTACTGGATCTCTCAAAAGTCGTCCTCAAAGAAACACTTGGCATGAGATGCTGAAACTGAAAGGATGGCTGTCTTCCCAAGTATTCAAAGAGCAATTTCCCGCTCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCTTTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCAACACGGGAGTGCGAAACATGACATTGGGCCATATGTTTATATTTCGTATGGCTGTGATGACATAGAAGCTGATTCTGTGACAAAACTCTTCTGTGACTCAAATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAACTTGCAAAAATAAGGAAATTGCTGAAGAAGCACAAAGCTCTGTGTCAAGTGGAGTATGTCGCTACTGAACAGTTACCTGGAAATAATGTGAAAGGAATGATATTATCACGTGCTGAAGAAATGGAACAAAAAGGTTTGCGGAGTATGGGGAAAGAAGGAATGGAATTCTTCAGGAGAGTCGATAGAACATCTTGCATCTCAACTGAAGCTAAAAAAGCTTCTACTCAGAGTATAGACAGCAATATTTCCCAGGATGGAGAACGCTGCATCTTTACTGATTCTGAACCCTCTCTTCATGGGACTGTTCATACCACCAATTTGTCAGCACATGATAATCCTAAAAGTCCCTCTGAAAGCTTCAACAGTTGTAAGAAAAAGTTTACCGAGCATTCAGGCGCCCAGTGGGACGTCTTTCGTAGACAAGATGTGCCAAAGCTCATAGAATACATTACAAGACACTATGATGAACTTATTTATACCCATGACTCTCACACGAAGATGGTTCATCCAATTCTAGACCAGAGCATTTTTCTTGACAGTACTCACAAAATGAAACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGTTGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTCCATGCGGTACTGGAATTTGTGTCCCCTGAGAATGTTACTGAGTGTATCCAGTTGATTGATGAAGTCAGACAGTTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCTCTACACAGCATGAGTACAGCAATTAAAGAAATACGCCAGCTTACATGCAAAACATGA 3132 0.4163 MKKESASANEEVLPDNLRCGRTDGKQWRCKRRVMDDLKLCEIHYLQGKHRQYREKVPESLKLQRKRKNEGETVVIDNAETEAARAESKFKMELRKIKKKRKFSEDSEALTDTPSASASASAPATVSVRKRTMKQCDTQLDLIRMVLEREVEKRKGNSSSNNKKKKKKKKKEIKTEEVELRHYNEGELRKELPNGVMEISPALMPHDYNNVSSHCDVKVGADHKIVAVTPRYFRSKNIDRVAAGKLQVMPNGPNLKKGNTKMKKCHWCQRSDSVNLVQCSSCQKEFFCFGCIREQYLDTRSEVKKACPVCQRTCTCKDCLGSQCNDSESKPCVTGKIRVDRILHFHYLICMLLPVLKRISEDRETELETKAKFKGKNISDIQIKQVEFGYNENINCNHCRIPVLDLHRSCVSCSYSLCLSCCEKLCPGRTSGEINSSMLKQPDQMDPCGDNESRILDQNGISCDNLTGISTLPERRNCNDIEKLSCPPTELGGCGTGMLDLKCIFPPTLLKEMEIKAEEIVCSYDFPETLDKSSSCSLCFDTDLNTNRYNQLQKSAEREDSSDNCLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDVLQSSSNLSWNPLFMFCTYLEQSITKYENNKELLESCLDWCEVEINIRQYFTGSLKSRPQRNTWHEMLKLKGWLSSQVFKEQFPAHFSEVIDALPVQEYMNPLSGLLNLAANLQHGSAKHDIGPYVYISYGCDDIEADSVTKLFCDSNDVVNIMTHSADVPLSTEQLAKIRKLLKKHKALCQVEYVATEQLPGNNVKGMILSRAEEMEQKGLRSMGKEGMEFFRRVDRTSCISTEAKKASTQSIDSNISQDGERCIFTDSEPSLHGTVHTTNLSAHDNPKSPSESFNSCKKKFTEHSGAQWDVFRRQDVPKLIEYITRHYDELIYTHDSHTKMVHPILDQSIFLDSTHKMKLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDEVRQLPEDHKAKVDKLEVKKMALHSMSTAIKEIRQLTCKT 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04237 1043 ProSiteProfiles Zinc finger RING-type profile. 264 310 IPR001841 -
Vivi5g04237 1043 Pfam WRC 14 55 IPR014977 -
Vivi5g04237 1043 Gene3D Cupin 569 1015 - -
Vivi5g04237 1043 SMART cupin_9 678 1006 IPR003347 -
Vivi5g04237 1043 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Vivi5g04237 1043 Coils Coil 75 95 - -
Vivi5g04237 1043 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 15 1041 IPR045109 GO:0032454|GO:0033169
Vivi5g04237 1043 MobiDBLite consensus disorder prediction 100 129 - -
Vivi5g04237 1043 ProSiteProfiles JmjC domain profile. 697 1006 IPR003347 -
Vivi5g04237 1043 MobiDBLite consensus disorder prediction 108 129 - -
Vivi5g04237 1043 SUPERFAMILY Clavaminate synthase-like 577 1033 - -
Vivi5g04237 1043 Pfam JmjC domain, hydroxylase 892 984 IPR003347 -
Vivi5g04237 1043 MobiDBLite consensus disorder prediction 150 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04237 Vivi-Chr5 139310570 139317149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04237 8 93 GRF Transcription Factor Family AT4G37740 32.609 1.36e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi5g04237 JmjC 7.4e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04237 K15601 - gmx:100810673 1417.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04237 5 139310570 139317149 Vivi5g04237 5 139310570 139317149 PCT