Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04224 ATGCAGATTGCTCTCAAGCAACCACCTAAACCTATAGCTGAGATACCTTCTAGTGAGACTATAGGCTTAGACTTGATGGTCCACAAAGTATGGAATTCTCTTGACGATGAGAGTGTTGGAGTAATTGGTTTATATGGAATGGGTGGGGCCGGAAAAACAACTCTTATGAAAAGAATTCAAAATGAATTACAAACTAGGGATCATAGTTTTGATCTAGTGTTATGGGTAGTGGTTTCTAGAGATTGTGACATCAATAAACTAATGAATGACATCAGCAATAAATTAGGAATCGATGAAGGTTTTTGGAATAGATGTACTCAAGACCAAAGAGTAGCAACTATTTATGACCGATTAAAAGGAAAAAAGTTTTTTTTGATGTTAGATGATTTGTGGGGAAAGCTAGAACTAGAAGCAATAGGAGTTCCTGATCCGAAAAAAAATAACAAATCAAAAGTATTGTTCACAACACGATCTGAAGATGTGTGTGGTAAAATGCAATCTCAAAAGAAATTCAAAGTGGAATGTTTATCAGAGGACGATGCATTTGATTTGTTTTGTAAGAAAGTAGGTGATGAGACTTTAAAATGTCACTCAGAGATCCCAAAGCTAGCACATGAAATGGCAACAGAATGCAGAGGATTGCCGCTAGCATTAATCACTGTGGGAACTGCCATGGCTGGAGTGAATAAATATGAAGCTTGGATGGTTGCAAAAAATAACTTGAGGAGTTCTCATTGGACAAACTCAGATTTCGAGGATAAAGTTTTTCATATCCTCAAGTTTAGCTACGACAAACTTCCTGATGAGGCACATAAAAAATGCTTCTTGTACTGCGCACTTTACCCAGAAGATTTTGAAATAGACATTGATGGCCTTATTGATCGATGGATCGCTGAGGGATTTCTCTATAAAGATGATATTAGTATATATGATATGTACAATCAAGGGAAGTCTGTTACTGAAAAATTAATACTTTCATGCCTATTAGAGGAGGGTATTGGTACTACAAACCATTTTCATAGAAGGTATAAAATGACAATTAAGATGCATGATGTGATTAGAGATATGGCACTATGGTTAGCTCGAGATGAAGACAAAAACAAAGACAAAGTTTTGGTTCAGGGGGAAGTATTTTCAATGACAAAAATGGATTCTAAAAGATTGAATGCTGTAGAGAGGATTTCAATAATAATTTCTGAGAGTCTTGATATAAACTTGAATCTTCCAACTTGTCCAAACCTCATCACCTTTTGCTTTAGCAGTCAACAAATGTTGCTCGGTTATTATCCTATTTTATCAACAAATTTCCAATCACTAAAAAGGTTGAGAGTGTTGGATTTATCATATCTTAGTTCTCTTAAGCTAATCTCCCCTGAAATAGGTGAGTTAATCAACTTGGAGTTTCTTAACATTTCAGGAACATATGTATATCAATTGCCCATTGGATTGAAAAAGTTGATAAATTTGAGGGTATTCCTTATGAATGATATGAGAAAGAATCATGAAGTCATTCAATTCGAAGGGATAGAAAGTCTAGAACAATTAAAGGTGTTTAGATATAGCAGAGATCAATCATATGGAAGTGTTGTACAAGGAGAAATATCATTACTTGAAAAACTGGAATCCTTACCAAATTTGGAGGAACTGAGCATCGAATTAACTAGCTTCACTAGTGGGCAAAGACTATTTCACTCGACCAAATTAAGAGGTTGCTCTCGACATCTTAGTCTTTATTGGAAGGAGAAAGACACACTTGAAATGTCATCATTATTAGCATCCATGTCAGAAATGACTCATTTGGAATGCATACATCTTTTATGGATATGCGGCCTCGTGGATGGTTCATCAGTTACTGAAAAGTGTCATCTTGGCAAGCTTCGACAAGTGCGCATACATGGTTGTGGTTCAATTACTCATTTGACCTGGTTGAGGTATGCTCCGCTTCTCGAGTACCTTGTTGTTTGTTATTGTTATTCAATTGAACATATGGTGAAGGAAGCCAAAGAAGACGAAGAAATTGGCTCAGAATCTAAGAAAGATAATATGTTCACAAATCTTAAAGAACTTTGCCTTTCAAATAACCCAAAGCTAGTGAGCATCCACAAAAGAGCTTTGGCTTTTCCTTCGCTAAGACGTATTGTTGTATATTCTTGCCCCAATCTAAAGAAGCTTCCCTTCAACTCCAGCTTTGCCTCCAAGGACAATTTGGTTGCAATTGAAGGAGGGACCAAGTGGTTGGACAATTTAGAGTGGGATGACACAATTATTGAACAATCACTACGTCCTAAATTTCAACATGGCTAG 2304 0.3628 MQIALKQPPKPIAEIPSSETIGLDLMVHKVWNSLDDESVGVIGLYGMGGAGKTTLMKRIQNELQTRDHSFDLVLWVVVSRDCDINKLMNDISNKLGIDEGFWNRCTQDQRVATIYDRLKGKKFFLMLDDLWGKLELEAIGVPDPKKNNKSKVLFTTRSEDVCGKMQSQKKFKVECLSEDDAFDLFCKKVGDETLKCHSEIPKLAHEMATECRGLPLALITVGTAMAGVNKYEAWMVAKNNLRSSHWTNSDFEDKVFHILKFSYDKLPDEAHKKCFLYCALYPEDFEIDIDGLIDRWIAEGFLYKDDISIYDMYNQGKSVTEKLILSCLLEEGIGTTNHFHRRYKMTIKMHDVIRDMALWLARDEDKNKDKVLVQGEVFSMTKMDSKRLNAVERISIIISESLDINLNLPTCPNLITFCFSSQQMLLGYYPILSTNFQSLKRLRVLDLSYLSSLKLISPEIGELINLEFLNISGTYVYQLPIGLKKLINLRVFLMNDMRKNHEVIQFEGIESLEQLKVFRYSRDQSYGSVVQGEISLLEKLESLPNLEELSIELTSFTSGQRLFHSTKLRGCSRHLSLYWKEKDTLEMSSLLASMSEMTHLECIHLLWICGLVDGSSVTEKCHLGKLRQVRIHGCGSITHLTWLRYAPLLEYLVVCYCYSIEHMVKEAKEDEEIGSESKKDNMFTNLKELCLSNNPKLVSIHKRALAFPSLRRIVVYSCPNLKKLPFNSSFASKDNLVAIEGGTKWLDNLEWDDTIIEQSLRPKFQHG 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04224 767 FunFam Probable disease resistance protein At5g66910 175 262 - -
Vivi5g04224 767 SUPERFAMILY L domain-like 348 730 - -
Vivi5g04224 767 Gene3D - 176 262 IPR042197 -
Vivi5g04224 767 FunFam Probable disease resistance protein At1g61300 4 170 - -
Vivi5g04224 767 Gene3D Ribonuclease Inhibitor 410 528 IPR032675 -
Vivi5g04224 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 278 IPR027417 -
Vivi5g04224 767 Gene3D Ribonuclease Inhibitor 534 740 IPR032675 -
Vivi5g04224 767 Gene3D - 11 175 IPR027417 -
Vivi5g04224 767 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 25 725 - -
Vivi5g04224 767 PRINTS Disease resistance protein signature 211 225 - -
Vivi5g04224 767 PRINTS Disease resistance protein signature 117 131 - -
Vivi5g04224 767 PRINTS Disease resistance protein signature 41 56 - -
Vivi5g04224 767 PRINTS Disease resistance protein signature 437 453 - -
Vivi5g04224 767 Gene3D - 263 358 IPR036388 -
Vivi5g04224 767 FunFam Probable disease resistance protein At1g63360 263 359 - -
Vivi5g04224 767 Pfam NB-ARC domain 26 264 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04224 Vivi-Chr5 139225667 139229296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04224 42 288 WRKY Transcription Factor Family AT5G45050 23.715 5.10e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04224 - K13459 psat:127102790 1189.48