Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04216 ATGCGCAATTTCAGTTTCTTCCACCGTTTCTCCAAAACGTTCCGCGACTATGACTCGCAGTTCAAGCTTGTCCTCCTCTGCACCACCGTAAGTGGCGGTGGTCTTTTGGCATACGGCGAGGCGGTTGCTACATCTGACGCGGCGGTGCCTGAGAAGAAAAAGGTGTTGGTGCTCGGAACTGGTTGGGCAGGAACAAGTTTCTTGAGGAATCTCAACGATCCTCGATATGAGGTTCACGTTGTCTCTCCTCGGAACTATTTTGCATTCACTCCTTTGCTGCCCAGTGTTACCTGTGGCACCATCGAGGCTCGCAGCATTGTTGAACCCGTCCGCAATATCTTCAGGAAGAAACATGTGGACTCTCGATTCAGTGAAGCAGAATGTATCAAGATTGATGCAGTAAACCGAAAAGTTTACTGTCGGGCTAATATTAGCAATAATTCGAATGAAAAAGAAGAATTTGTTGTGGACTATGACTACTTAATCATAGCTGTGGGGGCTAATGTCAACACATTTAATACTCCTGGAGTCACGGAGAATTGTCATTTCTTGAAGGAAGTTGAAGATGCACAGAGGATTAGAAGAACTGTAATTGACTGCTTCGAGAGAGCAAGTTTGCCTAGTGTAAGTGACGAAGAAAAAAAGAGGATTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCGCACTTCATGATTATGTCAGTGAGGATTTGGTCAAATTATATCCCGGGGTAAAAGATTTATTTAAAATTACCCTTCTGGAGGCTGGAGGTCATATCTTGAGCATGTTTGACAAAAGGATAACAACTTTTGCTGAAGATAAGTTCCGAAGAGATGGTATTGATGTGAAAACAGGATCCATGGTTGTGAAGGTATCTGACAAAGAAATTTCCACTAAAGAAATGAAAACTGGAGAAATGAGTTCAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGCCCATTCATAAAAGATTTTATGACACAAATCGGTCAGATTAATAGACGTGCCATAGCTACTGATGAATGGTTGAGAGTCGAGGGAACCAACAATGTGTATGCACTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGTCGCAATATTTAAGAAGACTGATGCAGACAACTCAGGAACAATTACGCTCAAAGAATTCCAGGCGGTAATGGATGACATCTTTGAAAGATACCCTCAGGTGGAGCTATTCCTAAAGAATAAGCAGATGCGTGGCATTGCTGATCTTTTGGAAGAATCCAAAGGAGATGTTGAAAAAGAATCTATTGAAATTAATATCGAAGAACTCAAAACTGCACTTTTGAATGTGGACTCGCAGATGAAATTCCTTCCTGCTACAGCTCAGGTTGCATCTCAGCAAGGAGCCTACCTGGCCAAGTGTTTTGACCGGATGGAAGAGTGTGAAAAAAACCCAGAGGGTCCTATTAGGTTCAGGGGAGAAGGTCGTCATCGGTTCAAACCCTTCAGGTACAAGCATTTAGGTCAATTTGCTCCTTTAGGAGGAGAGCAGACAGCTGCACAGCTACCTGGAGACTGGGTTTCAATTGGACACAGCAGTCAATGGTTGTGGTATTCTGTCTATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGGCATTAGTGGTATCAGACTGGATGAGACGCTTTATTTTTGGGAGGGACTCGAGTCAAATCTGA 1734 0.436 MRNFSFFHRFSKTFRDYDSQFKLVLLCTTVSGGGLLAYGEAVATSDAAVPEKKKVLVLGTGWAGTSFLRNLNDPRYEVHVVSPRNYFAFTPLLPSVTCGTIEARSIVEPVRNIFRKKHVDSRFSEAECIKIDAVNRKVYCRANISNNSNEKEEFVVDYDYLIIAVGANVNTFNTPGVTENCHFLKEVEDAQRIRRTVIDCFERASLPSVSDEEKKRILHFAIVGGGPTGVEFAAALHDYVSEDLVKLYPGVKDLFKITLLEAGGHILSMFDKRITTFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKTGEMSSIPYGMAVWSTGIGTRPFIKDFMTQIGQINRRAIATDEWLRVEGTNNVYALGDCATINQRKVMEDIVAIFKKTDADNSGTITLKEFQAVMDDIFERYPQVELFLKNKQMRGIADLLEESKGDVEKESIEINIEELKTALLNVDSQMKFLPATAQVASQQGAYLAKCFDRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWMRRFIFGRDSSQI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04216 577 Coils Coil 439 459 - -
Vivi5g04216 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 421 576 - -
Vivi5g04216 577 Gene3D - 426 576 - -
Vivi5g04216 577 Gene3D - 43 411 - -
Vivi5g04216 577 PANTHER NADH DEHYDROGENASE 48 577 IPR045024 GO:0003954|GO:0006116
Vivi5g04216 577 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Vivi5g04216 577 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Vivi5g04216 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 43 404 - -
Vivi5g04216 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
Vivi5g04216 577 SUPERFAMILY FAD/NAD(P)-binding domain 214 372 IPR036188 -
Vivi5g04216 577 SMART efh_1 379 407 IPR002048 GO:0005509
Vivi5g04216 577 SUPERFAMILY EF-hand 368 464 IPR011992 -
Vivi5g04216 577 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Vivi5g04216 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Vivi5g04216 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Vivi5g04216 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04216 Vivi-Chr5 139023622 139028580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04216 1 577 EF-hand Containing Proteins AT4G05020 70.740 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04216 K03885 - gmx:100809915 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01763 5 63120540 63123524 Vivi5g04216 5 139023622 139028580 PCT