Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04156 ATGGATAATCTAATATTAAAGATGAGGAGTTTCTACTACTCTATGGTTCTTTTACTTTTTGTACTATCTTTTAACCCTTCTGTTTCATCTAGATCTCATAGGCACTATATTGGTGGAAGAAAATTGAGAAGCTCTGGTGATAATGGTAGTGATCTTGTCACTAATTTGCCTGGACAACCTCATGTAGATTTTCAACACTTTGCTGGTTATGTCACTGTCAATGAAACCAATGGAAGATCACTCTTTTATTGGTTTTATGAAGCTATGACCAAACCAGAAGACAAACCATTGGTTCTATGGCTTAATGGAGGACCTGGGTGCTCATCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGATAATAACAATAATGGACAAGGTCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAATATGTTATTCCTAGAATCTCCTGTCGGAGTTGGCTTTTCCTACTCAAATACAACCACTGATTATCAACAATTGGGTGATGACTTCACAGCTAATGATGCTTACAATTTTCTACATAATTGGTTCCTCAAGTTTCCATCATATAGAACCAAGACATTTTACATAGCAGGAGAAAGCTATGCAGGAAAATATGTACCAGAACTTGCTGAACTTATACATGATAGGAACAAGGACCCATCTCTTTACATTGATCTCAAGGGAATTTTGCTAGGTAATCCTGAAACATCTGATGCTGAGGATTGGATGGGACTAGTTGATTATGCTTGGAGTCATGCAGTGATATCTGATGAAACACACAAAACAATCAAGAGAAGTTGTGATTTTAACAGCAGTGATCCATGGAAGAATGAAGAGTGTGATCAAGCTGTGGATGAAGTGCTTAAACAGTATCATGAAATTGATATCTATAGTCTCTATACTTCTGTTTGTTTTGCAACTACAGCAGGTTCTAATGATCAATCAATGCAAACTTTCACCAAACGTTCAACCAAAATGATGCCTAGAATGATGGGTGGTTATGACCCATGCTTGGATGACTATGCTAAAGCTTTTTATAATAGACCTGATGTTCAGAAGGCCCTTCATGCTAGTGATGGTCACAATCTAAAGAATTGGACTATTTGCAACAACAAGATATTCAATGACTGGGCGGATTCAAAGCCATCAGTTATCCCAATTTACAAGAAACTGATATCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCAGTTCTATCAACCAGATACAGCTTAAGCACTCTAGCTTTGCCAGTGACTAAACCATGGAGACCATGGTACCATGAAAATGAGGTAAGTGGATGGTATGAAGAATATGAAGGGCTTACATTTGCAACATTTAGAGGAGCTGGTCATGCAGTTCCATGTTTTAAACCAAGCAACTCACTTGCATTTTTCACCTCATTTCTACATGGAGAATCACCACCTTCTACAAAATAA 1464 0.3777 MDNLILKMRSFYYSMVLLLFVLSFNPSVSSRSHRHYIGGRKLRSSGDNGSDLVTNLPGQPHVDFQHFAGYVTVNETNGRSLFYWFYEAMTKPEDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDNNNNGQGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTTDYQQLGDDFTANDAYNFLHNWFLKFPSYRTKTFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKTIKRSCDFNSSDPWKNEECDQAVDEVLKQYHEIDIYSLYTSVCFATTAGSNDQSMQTFTKRSTKMMPRMMGGYDPCLDDYAKAFYNRPDVQKALHASDGHNLKNWTICNNKIFNDWADSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSTLALPVTKPWRPWYHENEVSGWYEEYEGLTFATFRGAGHAVPCFKPSNSLAFFTSFLHGESPPSTK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04156 487 Pfam Serine carboxypeptidase 58 480 IPR001563 GO:0004185|GO:0006508
Vivi5g04156 487 FunFam Carboxypeptidase 47 308 - -
Vivi5g04156 487 SUPERFAMILY alpha/beta-Hydrolases 48 481 IPR029058 -
Vivi5g04156 487 Gene3D alpha/beta hydrolase 48 308 IPR029058 -
Vivi5g04156 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 158 IPR001563 GO:0004185|GO:0006508
Vivi5g04156 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 184 209 IPR001563 GO:0004185|GO:0006508
Vivi5g04156 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 147 IPR001563 GO:0004185|GO:0006508
Vivi5g04156 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 450 463 IPR001563 GO:0004185|GO:0006508
Vivi5g04156 487 Gene3D - 339 375 - -
Vivi5g04156 487 FunFam Carboxypeptidase 386 480 - -
Vivi5g04156 487 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 52 467 IPR001563 GO:0004185|GO:0006508
Vivi5g04156 487 FunFam Carboxypeptidase 336 482 - -
Vivi5g04156 487 Gene3D - 386 480 - -
Vivi5g04156 487 ProSitePatterns Serine carboxypeptidases, serine active site. 198 205 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04156 Vivi-Chr5 138121157 138124504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04156 344 481 Calmodulin-binding Proteins AT2G22960 33.813 6.92e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04156 K16297 - gmx:100815993 885.56