Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04155 ATGGACAGCACTGATTCATCTTCATGCTCTCATCACCCTCATCTCCCACCAGGCTTCCGTTTCCACCCAACCGATGAAGAACTTGTTGTTCATTACCTCAAGAGAAAAGCTGCTTCTGCACCTCTTCCTGTTGCCATCATAGCAGAGATTGATCTCTACAAATTCGATCCATGGGAACTACCGAGTAAGGCAACTTTTGGGGAGCAAGAGTGGTATTTTTTCAGTCCAAGAGATAGGAAATACCCAAATGGGGCAAGGCCTAATAGGGCTGCAACATCTGGGTACTGGAAAGCTACTGGAACTGATAAACCTATATTAACATGTGATGGACATGTGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGAGTTAAAACTAATTGGATTATGCATGAGTATAGGTTGATTACTGATCATAATAATAATAATAGTAGTTCCTATAATGCAGCATCAAAAACTCCTTCTCTGCCTGTTGTTGATCATCCTCCAAACAATAATAAGAAGAACTCTCTCAGGCTCGATGATTGGGTTTTGTGTCGAATATACAAGAAAAGCAACAGCAGCACTATGCCAAGGCCACCTCTAATGGATCAATATGACAAAGACTTTTCTATGGAACAAACATATAACATGCAAAATAACTCTAAACCTCCATCATCAAGAAGCACAAGTTATGGACTTGAAAATGATGACAATTTCTTTGATGGAATTTTAGCATCTCAACATCATCATCATCAAGGAATGCAAAATTGTGACATGAACTCAAAGGGTGATGATAATAATAACAATAATAGTGATACGTTCCCTATGAAACGTGCACTAAATGGATCATCATCATCACAGTTTTGGAATGAAACAGGTTCACCGGGGTCATCTTCTTCAAGTAAACGATTCCATGGAGATCTTAATAGTGGAATAAGCAGTAATAATGCTGATGAAAATAATTCATTTGTTTCTCTTCTTAGCCAGCTTCCACCAAATGCAACGTTTCATCAAAACTCTATTCTTGGGTCTGTTGGAGATGGTGTAATGAGGCAACAATTTCAACTTCCAGATATAAATTGGAACTAA 1092 0.3846 MDSTDSSSCSHHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTCDGHVKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNNNSSSYNAASKTPSLPVVDHPPNNNKKNSLRLDDWVLCRIYKKSNSSTMPRPPLMDQYDKDFSMEQTYNMQNNSKPPSSRSTSYGLENDDNFFDGILASQHHHHQGMQNCDMNSKGDDNNNNNSDTFPMKRALNGSSSSQFWNETGSPGSSSSSKRFHGDLNSGISSNNADENNSFVSLLSQLPPNATFHQNSILGSVGDGVMRQQFQLPDINWN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04155 363 MobiDBLite consensus disorder prediction 251 317 - -
Vivi5g04155 363 MobiDBLite consensus disorder prediction 216 235 - -
Vivi5g04155 363 MobiDBLite consensus disorder prediction 151 174 - -
Vivi5g04155 363 FunFam NAC transcription factor 56 24 196 - -
Vivi5g04155 363 ProSiteProfiles NAC domain profile. 15 191 IPR003441 GO:0003677|GO:0006355
Vivi5g04155 363 PANTHER NAC TRANSCRIPTION FACTOR 56 15 255 - -
Vivi5g04155 363 SUPERFAMILY NAC domain 11 191 IPR036093 GO:0003677|GO:0006355
Vivi5g04155 363 Gene3D NAC domain 24 196 IPR036093 GO:0003677|GO:0006355
Vivi5g04155 363 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04155 Vivi-Chr5 138104064 138106091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04155 5 363 NAC Transcription Factor Family AT1G61110 54.098 7.86e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g04155 NAM 3.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04155 - - gmx:100797132 488.419