Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04149 ATGGGTTTGAGTTCTAAACAGGTTATTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTAGAATCTCAAGATTTGGAACTTCCAAAGCCTCATCAACTAATGAGAAAACAGCAACAAAATCCTCAGCAGCAATCAGCAGAACACTTGAATTGTCCAAGATGTGACTCAACAAACACAAAGTTTTGTTACTATAACAATTACAACAAGTCTCAGCCTCGCCATTTTTGTAGAGCTTGTAAAAGACACTGGACTAAAGGTGGAACTCTACGCAATGTTCCGGTTGGCGGTGGCAGAAAGAATAAGAGAACCAAAAAATCAACCACAACAACTACTTCTTCCACCACCACCACCACCACCATAGCAACCACTACTTGCACCACCTCAATTCAAACACCTCTTCAAGTGAGTGATCATCACAAAACCATTCCTAACTCATCTCTATATCAAGCTCTAATCCATCCACCATCTTTGCTTCTACAACAGAATATGATGATGAACACAAGAGACTTATTAGTAGAAAGCAAAGATTTTGGCATGTTTACTACTACTTCTTCAACTCTACCTATTCCTCATCAGAATCAAAGCTTGCTCTTTCCCTTTTCAACCTCCTCAAGTTCATTTGACACAGCCACTTGTTCATCTTCCAATGTTTTTTACTATGGACAAGAGTTTAAAACAATGGAGGAACAAGAACAGGAACAAGAACCTATAATTCCTAACACAAAGCCATGGGAGATGCCGATACCGATACCAACATCATTATCATTACCAGCAACAAGTGGTGGCATGGAAGCTTCAAAGTATTGGAACTGGGAAGACATTGATTCATTGGTATCAGCTGATTTAAAGGATCCTTATTGGGATGATTCTGATATCAAACCATGA 888 0.3908 MGLSSKQVISSSGLDWKQTLLESQDLELPKPHQLMRKQQQNPQQQSAEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRTKKSTTTTTSSTTTTTTIATTTCTTSIQTPLQVSDHHKTIPNSSLYQALIHPPSLLLQQNMMMNTRDLLVESKDFGMFTTTSSTLPIPHQNQSLLFPFSTSSSSFDTATCSSSNVFYYGQEFKTMEEQEQEQEPIIPNTKPWEMPIPIPTSLSLPATSGGMEASKYWNWEDIDSLVSADLKDPYWDDSDIKP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04149 295 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Vivi5g04149 295 Pfam Dof domain, zinc finger 49 103 IPR003851 GO:0003677|GO:0006355
Vivi5g04149 295 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Vivi5g04149 295 MobiDBLite consensus disorder prediction 90 115 - -
Vivi5g04149 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 206 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04149 Vivi-Chr5 138016085 138017434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04149 38 175 C2C2-Dof Transcription Factor Family AT1G51700 43.836 1.48e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi5g04149 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04149 - - mtr:25493206 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04149 5 138016085 138017434 Vivi5g04149 5 138016085 138017434 PCT