Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04113 ATGTGTGAAAACATGATGGAGATAAACTTTGGTGATTCAATAAGCAATTTATCTTGTGATGATAAAGATGGTTTCATGTCCCTTAAGAAGACATCATCATTAAAGTGTCCTCCACCATTTTTGATGAAGACTTATGAATTATTGGAAGAAGGTAGTGAAGTTGAAGATGGGATGAAAATAGTGTCATGGAATGAAGAAGGAAATGGTTTTGTTGTTTGGTCTCCAGCTGAATTCTCAGAGCTTATCTTGCCTAGATATTTCAAACACAACAATTTCTCTAGCTTTATTCGACAATTGAATACTTATGGGTTTAGGAAAATATCATCTAAAAGATGGGAATTTCAGCATGAGAAATTCCAAAAGGGTTGCAAGCACATGTTGGTTGAAATCAGTAGGAAAAAGTGTGAGCCAAGTGTGTTTCCTTCGTACCTTAAATCTTGTTCAGAGGAAAATGCAATGACTAATAATTCATCAGTGGAAGAAAATAATGATAATCATGAAATACTTATGGAGGAGAACAAGAATCTAAAGAAGGAGAGATTAGAGTTGGAAATGCAAATAGCTGAATGTAAGGCACTTGAAATGAAGTTGTTGGAGTGTCTTTCTCAATGTATGGATAGCCAACAAAATAAAGTTAGGAGATTATGTTAA 651 0.341 MCENMMEINFGDSISNLSCDDKDGFMSLKKTSSLKCPPPFLMKTYELLEEGSEVEDGMKIVSWNEEGNGFVVWSPAEFSELILPRYFKHNNFSSFIRQLNTYGFRKISSKRWEFQHEKFQKGCKHMLVEISRKKCEPSVFPSYLKSCSEENAMTNNSSVEENNDNHEILMEENKNLKKERLELEMQIAECKALEMKLLECLSQCMDSQQNKVRRLC 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04113 216 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 200 IPR027725 -
Vivi5g04113 216 Pfam HSF-type DNA-binding 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g04113 216 FunFam Heat stress transcription factor A-6b 33 134 - -
Vivi5g04113 216 SUPERFAMILY "Winged helix" DNA-binding domain 37 133 IPR036390 -
Vivi5g04113 216 Coils Coil 159 198 - -
Vivi5g04113 216 Gene3D - 33 134 IPR036388 -
Vivi5g04113 216 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g04113 216 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g04113 216 SMART hsfneu3 36 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g04113 216 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04113 Vivi-Chr5 137526790 137528448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04113 23 208 HSF AT5G62020 33.962 1.30e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi5g04113 HSF_DNA-bind 3.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04113 K09419 - gmx:100783723 295.819