Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04110 ATGGCGTTTGAGCAAGAAGATTTCTTTTCCAAAGAATGGAATTCCATAGGAAGTTCTATGAGTCTGACAGAGACAGAGAAGAACTGTGAGAGTTGTTTTGATTGTAACATCTGTTTAGATTTTGCACATGAACCAGTAGTTACACTCTGTGGTCACTTATTCTGTTGGTCCTGTATCTACAAATGGCTCTATGTGCAAAGTGCTTCTCTTGCACCTGATGAGCCACCACAGTGTCCAGTTTGCAAACATGAAATATCTCACACAAAAATGGTCCCTCTCTACGGCAGAGGCCAGACCGAAATTCATCGCGACCGTGACCGTGACGGGAAAATTAAGCTTCAAGATGTTTCTATACCACCAAGACCAGCTGCTTCAGGAATTCAGTCTCTGTTTGCAATGGCAACATTGTCTCAAAGGGGTCAGCAGCAGCAGCAGCTGCTTCCATACCGTAATCCTTATCAAACTCAAAATATTAACCAAGAAAATGACGCAGCTGAAATGATGAATCTTGGTACCTTTATGACACCAGTATTTCCACACTTTATCTTTGGTAACTCAGAAAGTTCTGATCATGTGATGGGAAGTAGTAGCTCTAGGTGGAGAAGGCAAGAGATGCTAGCAAACAAATCGTTGAACAGAATATCATTTTTTCTCTTTTTATGCTTTGTACTGTGTTTTATCTTCTTCTGA 690 0.4101 MAFEQEDFFSKEWNSIGSSMSLTETEKNCESCFDCNICLDFAHEPVVTLCGHLFCWSCIYKWLYVQSASLAPDEPPQCPVCKHEISHTKMVPLYGRGQTEIHRDRDRDGKIKLQDVSIPPRPAASGIQSLFAMATLSQRGQQQQQLLPYRNPYQTQNINQENDAAEMMNLGTFMTPVFPHFIFGNSESSDHVMGSSSSRWRRQEMLANKSLNRISFFLFLCFVLCFIFF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04110 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi5g04110 229 SMART ring_2 35 81 IPR001841 -
Vivi5g04110 229 SUPERFAMILY RING/U-box 29 94 - -
Vivi5g04110 229 ProSiteProfiles Zinc finger RING-type profile. 35 82 IPR001841 -
Vivi5g04110 229 Pfam Zinc finger, C3HC4 type (RING finger) 35 81 IPR018957 GO:0046872
Vivi5g04110 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 146 IPR013083 -
Vivi5g04110 229 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04110 Vivi-Chr5 137432585 137433807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04110 23 215 C3H Transcription Factor Family AT4G27470 38.350 3.85e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04110 K10666 - qsa:O6P43_031837 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04110 5 137432585 137433807 Vivi5g04110 5 137432585 137433807 ECH
Vivi5g01688 5 58461473 58463869 Vivi5g04110 5 137432585 137433807 PCT