Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04108 ATGCAAAGCCAACAAGACAACGACGACGGCCCACCGCCCGGATGGCAACCTATTCCTACTCCCCAACGCCCACCGCCACTTCCATCCGGTTTTGCTCAAATGGTTTGTGGTTCTTGTAGACGTCTGCTTTCGTATCCATCGGGTGCCAAACATGTCAAATGTTCATGCTGTCAAACGGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGTGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATTGGGGCAAACAACAAGCGGCCTCCATGGTCTGTACAACAAAGCAAACCAATTCCTCCCAAAGCTAGCTGTTAG 375 0.488 MQSQQDNDDGPPPGWQPIPTPQRPPPLPSGFAQMVCGSCRRLLSYPSGAKHVKCSCCQTVNIVLEADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGANNKRPPWSVQQSKPIPPKASC 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04108 124 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g04108 124 PANTHER PROTEIN LSD1 5 120 IPR040319 -
Vivi5g04108 124 MobiDBLite consensus disorder prediction 12 28 - -
Vivi5g04108 124 MobiDBLite consensus disorder prediction 105 124 - -
Vivi5g04108 124 Pfam LSD1 zinc finger 36 60 IPR005735 -
Vivi5g04108 124 Pfam LSD1 zinc finger 74 98 IPR005735 -
Vivi5g04108 124 NCBIfam zinc finger domain, LSD1 subclass 71 99 IPR005735 -
Vivi5g04108 124 NCBIfam zinc finger domain, LSD1 subclass 33 63 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vivi5g04108 zf-LSD1 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04108 - - psat:127106613 236.498