Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04085 ATGGCTTCTGCACATTCTTCAGCTCTCAGTTCTCTCTCTTCTCTCTCTATCCGTTCCTCTTCCTCCTCCTCTTGTTTCTCTCTCCTCCCCACAACCAACAAACTCACATTCCCTCTCCTCACCAAAACCACCTCTCTCTCCTTCACCGCCAAATCCACCTCCTTCGACGACAATGCACCCGTCCCCGAAGAAATTCTTCCGTTCAACCCACCCGAAGTCCCGGAAGGCTTCATCGACCAGCCTTCCGTAGACGACGGACCAGTCGAAGAGGAAGACGAAATTGCTGCTGCGTATGAAGAAATCTACGGCGCGGCGTACAGTGGGGTTAGTGTGCTTGGAAATGATATATATGTGATGGATTCGAAGACGAGGAAGGCGACTGGGTATGGTTCTAGAAGGAAGAGAGAGAGGTTTAGAGATGGGTTGGAAGAGAGAGTTGTGCAAGTGAGAAGGGTTACGAAGGTTGTTAAAGGAGGGAAACAAATGAGGTTTAGGGCTATTATTATTGTTGGGGATAAGAAAGGACAAGTTGGTGTTGGTGTTGGGAAGGCTAAGGAAGTTGTTTCTGCTGTTCAGAAAGCTTCTATTAATGCTAGGAGGAATCTTGTTAAAGTTCCTATGACTAAGTACTCTACTTTTCCTCATAGAGCAGACGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCCGCTTCTCCTGGTACAGGAGTTATTGCTGGTGGATCTGTGAGAATTGTTCTTGAAATGGCAGGCGTTGAGAATGCTTTGGGGAAACAACTAGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTAGCTGCAGTGCAGAAAATGAGGCAGTACAGTCAGGTCTCCGAAGAGCGTGGTGTTCCAATGGAAGAGTTATGGAAGTAA 897 0.4738 MASAHSSALSSLSSLSIRSSSSSSCFSLLPTTNKLTFPLLTKTTSLSFTAKSTSFDDNAPVPEEILPFNPPEVPEGFIDQPSVDDGPVEEEDEIAAAYEEIYGAAYSGVSVLGNDIYVMDSKTRKATGYGSRRKRERFRDGLEERVVQVRRVTKVVKGGKQMRFRAIIIVGDKKGQVGVGVGKAKEVVSAVQKASINARRNLVKVPMTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVAAVQKMRQYSQVSEERGVPMEELWK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04085 298 ProSitePatterns Ribosomal protein S5 signature. 159 191 IPR018192 -
Vivi5g04085 298 Hamap 30S ribosomal protein S5 [rpsE]. 119 295 IPR005712 GO:0003735|GO:0006412|GO:0015935
Vivi5g04085 298 FunFam 30S ribosomal protein S5 131 203 - -
Vivi5g04085 298 SUPERFAMILY dsRNA-binding domain-like 138 207 - -
Vivi5g04085 298 Pfam Ribosomal protein S5, C-terminal domain 219 289 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vivi5g04085 298 Pfam Ribosomal protein S5, N-terminal domain 142 206 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g04085 298 FunFam 30S ribosomal protein S5 207 298 - -
Vivi5g04085 298 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 135 293 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g04085 298 Gene3D - 132 204 - -
Vivi5g04085 298 ProSiteProfiles S5 double stranded RNA-binding domain profile. 142 205 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g04085 298 NCBIfam 30S ribosomal protein S5 141 295 IPR005712 GO:0003735|GO:0006412|GO:0015935
Vivi5g04085 298 SUPERFAMILY Ribosomal protein S5 domain 2-like 212 290 IPR020568 -
Vivi5g04085 298 Gene3D - 208 297 IPR014721 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04085 142 298 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 31.515 9.25e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04085 K02988 - gmx:100787105 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04085 5 137075342 137077827 Vivi5g04085 5 137075342 137077827 ECH