Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04084 ATGAATCAACCTCATCAAAATTATTCAGTTCCAATAGGGAAAAGTCTCAATCCTTTCATAATTCCAAATATCTATCTAGTTCATGCTCAAAGAGAAGATGATCAAAAGAAGATGGAAACAAGGAGATGCAAAGTTGCCCGAGAACAGAGGAGACAAAAATTACAAAAGATTAGAAGTACCCGTGCTTCTAAGGCCCGTGAAGTTACAATAGAGAAACCCCCAATTTATAGAGGGATCCAAAAAAGAATTCCACATGTTTTTTTCACTTCAGATGGAAAGCGATTTGAAGAAATTTTAACAAAGAAGTTAAGAAATAGCGATGTTAACAAGCTAGGCCGCATTGTCTTGCCAAAGAGGGAGGCTGAAGAAAAGCTTCCGACGCCAAGCAAAGAAGGGATCGAAGTTGTTTTTAAGGATATACATTATGGGCTTGAATGGAAAGTGAAATTCAAGTACTGGATTAATGTGAAAACTAAAATGTATGTTCTTGAGAATACAGCGAATTTAGTGAAGCATTATGGATTATGTATGGGAGATTATTTAAGCCTTTATGAGGACGAATCTAAAAACTTGTATTTGTACACAGAAAAAGGCTTCTGCTCTACCAACACTTGA 615 0.361 MNQPHQNYSVPIGKSLNPFIIPNIYLVHAQREDDQKKMETRRCKVAREQRRQKLQKIRSTRASKAREVTIEKPPIYRGIQKRIPHVFFTSDGKRFEEILTKKLRNSDVNKLGRIVLPKREAEEKLPTPSKEGIEVVFKDIHYGLEWKVKFKYWINVKTKMYVLENTANLVKHYGLCMGDYLSLYEDESKNLYLYTEKGFCSTNT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04084 204 Pfam B3 DNA binding domain 100 193 IPR003340 GO:0003677
Vivi5g04084 204 SUPERFAMILY DNA-binding pseudobarrel domain 98 193 IPR015300 -
Vivi5g04084 204 Gene3D - 88 199 IPR015300 -
Vivi5g04084 204 CDD B3_DNA 98 192 IPR003340 GO:0003677
Vivi5g04084 204 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 63 192 IPR044800 GO:0003700
Vivi5g04084 204 SMART B3_2 99 203 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04084 Vivi-Chr5 137068206 137071593 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04084 89 193 B3 DNA Binding Superfamily AT1G28300 53.774 5.43e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi5g04084 B3 2.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04084 K09287 - psat:127102899 315.464