Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04083 ATGAAGTTTAACGTTGCGAATCCCACCACTGGATGCCAGAAGAAGCTGGAAATCGATGATGACCAGAAGCTCCGTGCATTTTGGGACAAGAGGATCTCACAGGAGGTTCTTGGTGATGCTTTGGGCGAGGAGTTTAAAGGATATGTTTTCAAGATTACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGTGTGTTGACACCTGGGCGTGTTAGACTCTTGCTCCACAGAGGTACTCCTTGTTTCCGTGGACACGGAAGGCGTACTGGAGAGCGTAGAAGGAAGTCTGTTCGTGGATGTATTGTCAGCCCAGACCTCTCTGTTTTGAACTTGGTAATTGTGAAGAAAGGTGACAATGAATTACCAGGTCTTACTGATGTTGAGAAGCCAAGGATGAGAGGTCCTAAGAGAGCATCCAAAATTCGTAAGCTGTTCAACCTGTCAAAGGAGGATGATGTGCGAAAATATGTCAACACCTATCGTCGTACTTTTACCACCAAAGCTGGGAAAAAGGAGAGCAAAGCTCCCAAGATACAACGACTTGTCACTCCTTTGACACTCCAAAGGAAGCGAGCAAGAATTGCAGATAAGAAAAAGAGAATTGCTAAGGCTAAATCAGAGGCAGCAGATTATCAGAAACTCCTTGCATCCAGATTGAAGGAGCAGAGGGACCGCCGAAGTGAGAGTTTAGCAAAGAAGAGGTCTAGACTATCTACTGCCACCAAGCCAACTGCCACAGCATAG 750 0.4627 MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGDNELPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKESKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRDRRSESLAKKRSRLSTATKPTATA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04083 249 Coils Coil 189 216 - -
Vivi5g04083 249 MobiDBLite consensus disorder prediction 219 237 - -
Vivi5g04083 249 Gene3D - 133 234 - -
Vivi5g04083 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 239 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vivi5g04083 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vivi5g04083 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vivi5g04083 249 MobiDBLite consensus disorder prediction 219 249 - -
Vivi5g04083 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vivi5g04083 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04083 Vivi-Chr5 137042521 137044977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04083 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 74.297 1.58e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04083 K02991 - gmx:100786559 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04083 5 137042521 137044977 Vivi5g04083 5 137042521 137044977 PCT