Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04076 ATGGAGACAAGAAGCTCAGAGGGAAAAAGAACATGGAGGAACAAAGAGGTGGTGAACAATCATGAAGAGATGGAACAGGAGGATGAAGATGATGGAATAGATTTTGAAGAGGAGGGGGAAGGTAGAAAGAAGAGGGTAGTAAGAGATCTGTATAGTAAGAGTACTACAAGGTCCAAAGGTGGAGGGTCGAATATTCCACCTTGTTGTCAAGTGGAGAATTGTGATGCTGATCTAAGTGAAGCTAAGCAGTACCATCGGAGACATAAGGTGTGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGCAGAGATGCAGCAAAGGTTTTGTCAGCAATGTAGCAGATTTCATGAGCTATCTGAATTTGATGACACAAAAAGGAGTTGTAGAAGGCGTCTTGCCGGGCATAATGAGAGACGTCGCAAAAATGCAAGTGACTATCAAGGAGAATGA 453 0.4349 METRSSEGKRTWRNKEVVNNHEEMEQEDEDDGIDFEEEGEGRKKRVVRDLYSKSTTRSKGGGSNIPPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAEMQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNASDYQGE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04076 150 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Vivi5g04076 150 Gene3D - 60 130 IPR036893 GO:0003677|GO:0005634
Vivi5g04076 150 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Vivi5g04076 150 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 144 IPR044817 GO:0003677
Vivi5g04076 150 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
Vivi5g04076 150 PIRSF SBP 1 150 IPR017238 GO:0003677|GO:0003700|GO:0009908
Vivi5g04076 150 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g04076 150 MobiDBLite consensus disorder prediction 1 44 - -
Vivi5g04076 150 Pfam SBP domain 69 142 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04076 Vivi-Chr5 136953271 136957477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04076 59 146 SBP-box Gene Family AT2G33810 69.318 7.85e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi5g04076 SBP 5.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04076 - - gmx:100527199 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04076 5 136953271 136957477 Vivi5g04076 5 136953271 136957477 ECH
Vivi2g06200 2 196406129 196408381 Vivi5g04076 5 136953271 136957477 ECH
Vivi5g04076 5 136953271 136957477 Vivi5g04076 5 136953271 136957477 PCT