Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04074 ATGTCAAAAAATCAGCATTCTCACGTCGTCGAAGAGTCTCTCCAAGAGATCCATGAGACTAAAAATGAGGTCATGAACATCGAGGAGAAATCCAAAAATGAATCTGGATTGACTCAAAGGCAGTCCTCTAAAAATGAAGAAGAAGTTGATGAAAAAGAAATTGAAGAAGTTGATGAGGATGAAGTGGATGAAGAAGAAGAAGAAGTCTATTTTCTGGTTATGTATCTGAGGCTAGATTCATCTTCCTTTCGCAAAGATGTTGAATGTCCTATCTGTCTTGGCATCATTCAAAACACAGTTACTGCAATGAAATGTTTGCATCGCTTTTGCAGAGAGTGCATACACAAGAGCATTCGACTTGGTAAGAAAGAATGTCCTACTTGTCGTGTACATTGTCCTAGCAAAAGATCTATGAGAGATGATCCATCCTTTGATGCTATCATTGAAGTTCTATATCCAAATATTGACAAGTCAGAGAAAGAGGTAAGATATACATATTGA 501 0.3713 MSKNQHSHVVEESLQEIHETKNEVMNIEEKSKNESGLTQRQSSKNEEEVDEKEIEEVDEDEVDEEEEEVYFLVMYLRLDSSSFRKDVECPICLGIIQNTVTAMKCLHRFCRECIHKSIRLGKKECPTCRVHCPSKRSMRDDPSFDAIIEVLYPNIDKSEKEVRYTY 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04074 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 166 IPR013083 -
Vivi5g04074 166 MobiDBLite consensus disorder prediction 1 63 - -
Vivi5g04074 166 ProSitePatterns Zinc finger RING-type signature. 105 114 IPR017907 -
Vivi5g04074 166 MobiDBLite consensus disorder prediction 49 63 - -
Vivi5g04074 166 CDD RING-HC_RING1-like 86 148 - -
Vivi5g04074 166 MobiDBLite consensus disorder prediction 1 48 - -
Vivi5g04074 166 Pfam Zinc finger, C3HC4 type (RING finger) 88 128 - -
Vivi5g04074 166 ProSiteProfiles Zinc finger RING-type profile. 89 129 IPR001841 -
Vivi5g04074 166 SMART ring_2 89 128 IPR001841 -
Vivi5g04074 166 PANTHER OS11G0578200 PROTEIN 6 161 IPR044592 -
Vivi5g04074 166 SUPERFAMILY RING/U-box 88 143 - -
Vivi5g04074 166 Coils Coil 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04074 Vivi-Chr5 136926026 136927703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04074 86 129 RAD5 or RAD16-like Gene Family AT5G05130 40.909 1.01e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04074 K10695 - vvo:131607468 180.644