Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04073 ATGTCAGAAAATCAGCATTCTCTCGTCGTCGAAGAGTCTCTCCAAGAGAACAAGGAGACTAACAATGAAGAGAAACCCGAAGATGAACTTGATTTGACTCAAAAGCATTCCTCTGAAAATGGAGAAGAAGCTGAAAAAGTTGATGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGGAGAGGAGGATGAAGAAGAAGGAGAAGAAGAAAAAAAGTATGTGGTGTTAGATTTACCTTCACTTCGGAAAGAGATCGAATGCCCTATCTGTCTTGGCATCATTCGAAACACAAATACTGTAATGGAATGCTTACATCGCTTTTGCAGAGAGTGCATACACAAGAGCATGCGACATGGTAACAAAGAATGTCCCACTTGTCGTGTGCATTGTCCTAGCAAAAGATCAGTAAGAGATGATCCATCCTTTGATGCTATAATTCAACTTATTTGTCCAAATATTGACGAGTTTGAGAAACAGGAATTGGCCTACATTGAAAAGGAACTGGATCAGCCTAATAAGAAGGTGCCTTAA 531 0.3974 MSENQHSLVVEESLQENKETNNEEKPEDELDLTQKHSSENGEEAEKVDEEEEEEEEEEEGEEDEEEGEEEKKYVVLDLPSLRKEIECPICLGIIRNTNTVMECLHRFCRECIHKSMRHGNKECPTCRVHCPSKRSVRDDPSFDAIIQLICPNIDEFEKQELAYIEKELDQPNKKVP 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04073 176 ProSiteProfiles Zinc finger RING-type profile. 87 127 IPR001841 -
Vivi5g04073 176 SUPERFAMILY RING/U-box 86 141 - -
Vivi5g04073 176 ProSitePatterns Zinc finger RING-type signature. 103 112 IPR017907 -
Vivi5g04073 176 SMART ring_2 87 126 IPR001841 -
Vivi5g04073 176 MobiDBLite consensus disorder prediction 44 70 - -
Vivi5g04073 176 PANTHER OS11G0578200 PROTEIN 14 170 IPR044592 -
Vivi5g04073 176 Coils Coil 39 71 - -
Vivi5g04073 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 155 IPR013083 -
Vivi5g04073 176 MobiDBLite consensus disorder prediction 1 73 - -
Vivi5g04073 176 CDD RING-HC_RING1-like 84 149 - -
Vivi5g04073 176 Pfam Zinc finger, C3HC4 type (RING finger) 86 126 - -
Vivi5g04073 176 MobiDBLite consensus disorder prediction 12 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04073 Vivi-Chr5 136918277 136920740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04073 85 129 C3H Transcription Factor Family AT3G23060 41.304 5.25e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04073 K10695 - vvo:131607468 259.61