Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04071 ATGTCAGATAATCATCAACATTCTCACGTCGTGGAAGAGTCTCTCCAAGAGAACCAGGAGACTAAGATTGAAGAGAAACCCAAACATGAACTTGATTTGACTCAAAAGCATTCCAATGAAAATGGAGAAGAATGTGAAGAAGAAGTTGAAGAAGTTGATGAAGGAGAAAAAGAGGAAGAGGAAAAAATGAAGTATGTGGTGTTAGATTTACCTTCACTTCGGAAAGAGATCGAATGCCCTATCTGTCTTGGCATAATTCGAAACACAAATACTGTAATGGAATGCTTGCATCGCTTTTGCAGAGAATGCATACACAAGAGCATGCGACATGGTAACAAAGAATGTCCCACTTGCCGTGTGCATTGTCCTAGCAAAAGGTCAGTAAGAGATGATCCATCCTTCGATGCTATAATTCAACTTATTTGTCCAAATATTGACGAGTTTGAGAAACAGGAATTGGCCTACATTGAAAAAGAACTGGATCTGCCTAATAAGAAGGTGCCTTAA 507 0.3905 MSDNHQHSHVVEESLQENQETKIEEKPKHELDLTQKHSNENGEECEEEVEEVDEGEKEEEEKMKYVVLDLPSLRKEIECPICLGIIRNTNTVMECLHRFCRECIHKSMRHGNKECPTCRVHCPSKRSVRDDPSFDAIIQLICPNIDEFEKQELAYIEKELDLPNKKVP 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04071 168 ProSiteProfiles Zinc finger RING-type profile. 79 119 IPR001841 -
Vivi5g04071 168 MobiDBLite consensus disorder prediction 1 43 - -
Vivi5g04071 168 MobiDBLite consensus disorder prediction 1 61 - -
Vivi5g04071 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 147 IPR013083 -
Vivi5g04071 168 Pfam Zinc finger, C3HC4 type (RING finger) 78 118 - -
Vivi5g04071 168 ProSitePatterns Zinc finger RING-type signature. 95 104 IPR017907 -
Vivi5g04071 168 CDD RING-HC_RING1-like 76 141 - -
Vivi5g04071 168 PANTHER OS11G0578200 PROTEIN 6 161 IPR044592 -
Vivi5g04071 168 SMART ring_2 79 118 IPR001841 -
Vivi5g04071 168 SUPERFAMILY RING/U-box 62 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04071 Vivi-Chr5 136897538 136900496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04071 77 120 C3H Transcription Factor Family AT2G30580 40.000 9.49e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04071 K10695 - vvo:131607468 310.457