Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04070 ATGCCGGCACAGAAGCGCTCTTTCGAAGAGGCTCTCGAAGAGAATGAAGAGTCTGAAAATGAGATAAACAACGACGAGCAACCTAAAGATGAAGACGAATCGGATCAAAGCCATTCTTCATCTGACGACGAAGAAGGAGATGAAGATGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAATATGTGGCTATAAAATTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTTGGCATCATTCGAAAAACAAGAACCGTAATGGAATGCCTTCATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGCCTTGGTAACAATGAATGTCCTGCTTGCCGTACACATTGTGCTAGCCGACGGTCACTGAGAGATGACCCAAGCTACGATGCCTTGATTGCTGTTATGTATCCAGATATTGACAAGTATGAGGAACAGGAATTGGCTTTGCACGAGGATGAGATGGCTCGCCATAAGCAGTTTCAAGCATCCATTGCCCAAACACTACAACGGCAATCAGAAGCATTGAGTAAAAAACGAAATGCCAAAGCAACATCAGTGACTTTTGCGAGGAGATCCCAAGGAAACTCTCGAACTTCAAACCTCAAACGTCGAAGAAACTTTAGAAATGCTGGTGACTTTCAGGTATCCAATGACACCAAGGGTATGGATGATAATGATGGGGGAAAGGGATCATCTTCTGATGATGGGCAGATAGAAACCCAGCCAAGAAGATACAAAAGAGGCGGAGAACCAGAAGCGCAGTTTCCTCAGCATTCTCCCTCTACTGATCCAGATGGAGTTGGTGATGAAAATACTCCAGAAGTAAATAGGGAAATCCTAAGTGCATCCGGTACACTTTCCTGGGGAAAAAATGGTCACCGGAGTCACAGCCGAGCCAATGGAAAGAATGCCAAAAACAACCGCATCTCCAAATTGGTTGAACATATTCGTAACTCGGCAGAAAATGGCTATGAGCTGCTTACCTTTCTCATGCTTGTCTCATTGGATGAGCAAAGAATACCAAGTTTGAAGGATCCATGCCTTACTTGCAAGCCTACCATGTCGGTCAAGATACTGCGCAAGCATGTTGCAAATGAAACTGCCATGCCTGAGGGTGAAGTTGAATTGTGGATGATACTCAAGCCACAATCTAGCTTTGTAGAAGGTGAAAGAACCTTTGATCCAAACACAGATAATTTACGCATTCTAGAAGACCAAGAAACATTGGCTGAATTGCTGGGAACTTATGAAAATACCAGCCATGGTTATCTGGTCATGGCTTACAAGAGGACGTTGCAGAATTGA 1314 0.4429 MPAQKRSFEEALEENEESENEINNDEQPKDEDESDQSHSSSDDEEGDEDEEEEEEEEEEEEYVAIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPSYDALIAVMYPDIDKYEEQELALHEDEMARHKQFQASIAQTLQRQSEALSKKRNAKATSVTFARRSQGNSRTSNLKRRRNFRNAGDFQVSNDTKGMDDNDGGKGSSSDDGQIETQPRRYKRGGEPEAQFPQHSPSTDPDGVGDENTPEVNREILSASGTLSWGKNGHRSHSRANGKNAKNNRISKLVEHIRNSAENGYELLTFLMLVSLDEQRIPSLKDPCLTCKPTMSVKILRKHVANETAMPEGEVELWMILKPQSSFVEGERTFDPNTDNLRILEDQETLAELLGTYENTSHGYLVMAYKRTLQN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04070 437 MobiDBLite consensus disorder prediction 37 63 - -
Vivi5g04070 437 ProSitePatterns Zinc finger RING-type signature. 92 101 IPR017907 -
Vivi5g04070 437 CDD RING-HC_RING1-like 73 138 - -
Vivi5g04070 437 SMART ring_2 76 115 IPR001841 -
Vivi5g04070 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 139 IPR013083 -
Vivi5g04070 437 MobiDBLite consensus disorder prediction 174 309 - -
Vivi5g04070 437 MobiDBLite consensus disorder prediction 174 199 - -
Vivi5g04070 437 Coils Coil 1 25 - -
Vivi5g04070 437 PANTHER OS11G0578200 PROTEIN 1 434 IPR044592 -
Vivi5g04070 437 MobiDBLite consensus disorder prediction 279 297 - -
Vivi5g04070 437 MobiDBLite consensus disorder prediction 1 65 - -
Vivi5g04070 437 SUPERFAMILY RING/U-box 75 130 - -
Vivi5g04070 437 MobiDBLite consensus disorder prediction 13 30 - -
Vivi5g04070 437 Coils Coil 41 68 - -
Vivi5g04070 437 ProSiteProfiles Zinc finger RING-type profile. 76 116 IPR001841 -
Vivi5g04070 437 Pfam Zinc finger, C3HC4 type (RING finger) 75 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04070 Vivi-Chr5 136851874 136863846 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04070 69 139 C3H Transcription Factor Family AT3G23060 33.784 1.53e-06 48.5