Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04052 ATGGAAGGGGACGGTAGTTCGGAGGGAGAGAGTGATCGGAAAAGGGGCGGTGGCAGCGATGATAACGGCAATAACGGTGAAAGCAATAGCAAGATTGCTGTTTCCAATGAAGGTCAGAGCAAGCCTAAGAGGCAGATGAAGACGCCGTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCATTGGATAATTACCCTTCGGAGCCTGTGAGGATTGAGTTGTCTGAGAAATTGGGGTTGACGGATCGGCAGCTGCAGATGTGGTTCTGCCACAGGAGGTTGAAGGATAAGAAGGAGGCGTCGGCTCCCAAAAAAGAGTCTGTTGCTGCTCCAAAGAAGGTGCCAGTGTCACGTAAGCCAGCAGCCGAGCCTTTGCCGGATTCGCCGGTGGATGACCTTAGGTTAGATTCTGATCATGGTAATGGGTATGGATCAGGGTCGGGTTCAGGTTCGAGTCCGTATGCACGGTTGGAGTCTCTGAATGCAATCCCTGTCAGTGTTGGTTACTATGAGTCCCCACAGGCTGAAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGATCAGTTAGGTGAACCATTGAGGGAAGATGGGCCCATTCTAGGAATAGAGTTCGAGCAATTGCCACCAGATGCATTTGGAGCACCTATAGTTACAGAACACCAGAAGAGACCTCGTCTTGCCTATGACAGTAAAATATATGGAAGACATGATGTTAAAACAAACAAGGCTATGGCAAGGACTTTTCCTGAATATCAATATTCACCTAACCAGTCCGGCGCTAGATCTGATGCATTTGGACAGTTCAGCCAATCTCATTTACATGTTCCAAAGGAGGGTTCATCTAAAAAGCCTCAGTCTGTGCTTGGTAATGAACGGCCACCTAGAATTCATGGCATCAAGGGTCATTCTTCTCGCGTCTCCCAACAAGACAAGCAAGGGAGTCCCTTCCAATCTCCACCTCGGGACAATGATGTTACCCCTTCACGGGAATTGTACACAAGTACGGGGAAAGTTGGAATAAACTCCCACCTCACTGATAGCCAAACTGTTGGGCTGGAAAATACCTATGCTTCACCTAGTGGACAAATTTTGCAAAACAATGCAATGCATATCGATAGGAAACGAAAGGGTGATGATACCAAAATTACAAGGGATGTTGAAGCAAATGATATGAGAATCCGGAAAGAGCTCGAAAAACAAGAAAACCTCAGACGAAAGAATGAGGAGCGAGTAAAAAAAGAAATGGAGAGACAAGATCGTGAAAGAAAAAAGGAAGAAGAGAGATTGATGCGTGAGAGACTGCGTGAAGAGGAAAGAACAAAACGAGAGGAAAAACGTGAAAGTGAACGAAGGGAAAAGTATTTGCAGAGAGAAAATTTAAAAGCTGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGATGAAGAAAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAAAATAGCTAAGGAATCCATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTAGCTGTCTCAAGCAAGGGGCTTTCCTCTATTGTCCGTCTTGATTTTGATACTTTGCAAAACATTGAGTCATTTAGGGATTCATTGTGTCTTTTCCCACCTGAGAGTGTAAAGCTAAGAAAACCATTTGCTATCCAACCATGGATCAATTCAGAAGAGAATATTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTTTGGAGTTATGGCCTTTTACTCTTGATGAGTTCGTGCAAGCATTTCACGATTATGATTCAAGATTGTTGGGTGAGATACATGTTTCTCTCCTTAAGGTGATAATGAAAGACATTGAAGATGTTGCAAGGACACCTTCTTCAGGACTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGCGGCCATCCAGAGATTGTGGAAGGGGCATATGCTTGGGGCTTTGACATACGGAATTGGCATAGGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTATCTGCAGGATATGGACCGCAGTTTAAGAAAAGCAGTATTCTGTGTTCACGTGCAAATAATAAAAATGAGGGAAGAAATTGTGAAGATGTCGTTTCTGCACTTCGCAATGGTTCAGCAGCTGTAAATGCCGTGACAAAAATGCAGGAGAGAGGTCTATTAGGTCCTCGGAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAATTTGCGGCATTTCATGTTCTCTCACTAGAGGATGGTGAGGGATTGAATGTAATAGAGCTTGCCGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACGACCAGCAAGACCCCCGAGGCATCAATTTCTGTTGCTTTGACCAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGGAAGGATCCTGCTGATGCTGAGTCCATTCTTTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAAGAAGATGCTGATGATGTGGAAAGAGAAGAGTCAGAAAGTGAAGTTGACGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAAGTGTTAACAAAACATCTGAACTGTTCAATGATTTCTCATCAAATGGAAAAGAAATTCAAGGTCATGATGGAAAACTTAAAGAGGAGTTCGATAAGGATCTACCTTGTTTTCCTGACAATGGCTCCAAGAATGCTGATTATCCAAGTGCTGTTTCTGGACAACCTGTTGCTTGTGAAAATCTAAGTGCCAGAAATCTAGGCGAAGATAATATGGAAATTGATGAAAGTAAGTCTGGAGAGTCATGGATTCAAGGGCTTACTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGATTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGCAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTTGGCAGAGGCACATATTGATAAAACTCGCGTGAAAGATGATAATGTCAACAAATCAGATTTTCCTTCTATCAATGGTATCAAGGTTGAAACACAGATTGCATCTGCTGCTGTGGAGAGCAATCAAAGCCCATTGCTTGATATTAATATTTGCAATAATAATAATAATGATGAGGATTCTCCTAGCAAAGCAGAAAATAAAAGGCTAGCTCTTGTTGGACAAAGCCTCTCTGAAAAGCTCTCATCAGGTCAAGATCTCTGCATAGGTCCTGATAATGCTCAGACTATGTTATCTGCACAATATTCAAAACGGTCACGATCTCAGTTAAAGTCTTACATTTCCCACATAGCAGAGGAGATGTACATCTATAGATCCTTACCCCTCGGGCAAGACCGCAGACATAATCGATATTGGCAGTTTGTTGCATCTGCTTCTTGTAATGATCCTGGCTCGGGCAGGATCTTTGTTGAATATCATGATGGCAAATGGAGGCTTATTGATTCCGAAGAGGCCTTTGACACGCTTCTGAATTCATTGGATTCACGTGGGATCAGGGAATCACATTTGCGTCTGATGTTGCTAAAGATTGAGAATACATTTAAGGAAAATGTTCAAAAGAATGCAAAATGTGCCAAAATTGGAAACACAAACGAAATACGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGTCCTGATCATCATACTAGTTCTGACAGTCCTAGCAGTACTATCTGTGGCTTGAGCTCTGATACTTCAGAAACATCGTCATCCTTCAGAATTGAACTTGGAAAAAGTGAGAGCGACAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTCCAAAAATGGATGTGGAAAGAATGCTATAACCCATCAATATTATGTGCAACGAAATATGGAAAGAAGAGATGCAAACCTCAGGTTGACATATGTGATATCTGTCTCAACCTTTATTGCTTGGAAGACTCGCATTGCAGTCATTGCCACCTTACTTTTCCGTCAAATGATGGATTTAGTGTTTCTAAACATGCAATTCAATGTGGAGACAAGTTACCCAAAGATATTTGTATTCCAGAATCTCCTCTTCCATTGCGAACAAGGTTGCTCAAGGCTCTGCTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCAGTCAATTTGGACCGAGGATATTAGGAGGTTTTGGGGTGTGAAGTTGAGCAGATCATCTTCTGCTGAGGAACTTCTACAGATATTGACTCTATTTGAGAGAGCACTAAATCGAGACTTTTTATCATCACCTTTTGCTACAACTGGGGATTTGTTGGGGATGAACACTATGTCGGAGAGTGCCGCACTTACTTCTATGGATCTCAAATCAGTTACTGTTCTTCCATGGGTTCCACGGACCACTTCAGCTGTGTCTCTCAGACTTTTTGAGTTTGATACATCAATCACCTATGTAAAGCTTGAGAAACCTGATCCCTATCAGGAAAGAGAAGCTAGATACATAAAGCTTCCTTCAAGATATGCCGGTGTTAAATCTACTAAAGCGGTTGAACCATCATATATGGACTGTGATGAATTCATGAAAGTGAAGTCTGCCCCTATGAAAATTGTGCGAAGCAGCAGAAAACGGGCACGAGGGAATCATGACAAAGGAAGGGCTAAAAACCTGTCTAAAAGAACAAATGATTCCAAAAGAGACAACGGTCTCCTCAATTTTGAGGTCACTGAGAATCTAAGTCAAAGATTAAAACAGCAGGGACAAGGATCACAAGGGCACACAGGTGGACGTGGCCGCCGGACAGTTAGGAAAAGGAGAGAGGAGAATAGGGTTGATGATTTGTTGCTTAGCGATAGGGCTGCCATTACTAGCTCCAATTTTAGTAGAGAACCATCAAGAATCATGGACGAGGACTGGAGTGATGAGAAGCCAAGTCCCATCCCGAGGGAAGCTGCTGACATGAGTAGCAGCAGTGAAGAGGATGAATATGATGACAACACCCAGCCAATGGAATCTGATGACAATGTCGAAGCAGTTGAGTATGGTCAAGGAAACTGGGAGATAGGTTTTAATGGTACCCCCAACAGATGGAATAGGAATTTGGTTGGAATGAGTGATGAAGAACAACACTTGGAGGCTTCTGAAGATGACAATGACAATGGCATTGAAGGGAATGGAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGATGGTTCTGAAGCAGATGTTATTATGAGTGATGATGGTATGGCAAATAGAGTTGTAAATGAAGAAAGCTCAGACTCGAGTGACTCGGAAGATTATTCTGATTAG 5310 0.4266 MEGDGSSEGESDRKRGGGSDDNGNNGESNSKIAVSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSEPVRIELSEKLGLTDRQLQMWFCHRRLKDKKEASAPKKESVAAPKKVPVSRKPAAEPLPDSPVDDLRLDSDHGNGYGSGSGSGSSPYARLESLNAIPVSVGYYESPQAEMELRAIACVEDQLGEPLREDGPILGIEFEQLPPDAFGAPIVTEHQKRPRLAYDSKIYGRHDVKTNKAMARTFPEYQYSPNQSGARSDAFGQFSQSHLHVPKEGSSKKPQSVLGNERPPRIHGIKGHSSRVSQQDKQGSPFQSPPRDNDVTPSRELYTSTGKVGINSHLTDSQTVGLENTYASPSGQILQNNAMHIDRKRKGDDTKITRDVEANDMRIRKELEKQENLRRKNEERVKKEMERQDRERKKEEERLMRERLREEERTKREEKRESERREKYLQRENLKAERMRQKEELRKEKDEERRKAALEKATARKIAKESMELIEDEQLEMMELAVSSKGLSSIVRLDFDTLQNIESFRDSLCLFPPESVKLRKPFAIQPWINSEENIGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVSLLKVIMKDIEDVARTPSSGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHRHLNQLTWPEIFRQLALSAGYGPQFKKSSILCSRANNKNEGRNCEDVVSALRNGSAAVNAVTKMQERGLLGPRRSRHRLTPGTVKFAAFHVLSLEDGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDVEREESESEVDEDPEVDDLVNPSSVNKTSELFNDFSSNGKEIQGHDGKLKEEFDKDLPCFPDNGSKNADYPSAVSGQPVACENLSARNLGEDNMEIDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEAHIDKTRVKDDNVNKSDFPSINGIKVETQIASAAVESNQSPLLDINICNNNNNDEDSPSKAENKRLALVGQSLSEKLSSGQDLCIGPDNAQTMLSAQYSKRSRSQLKSYISHIAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSEEAFDTLLNSLDSRGIRESHLRLMLLKIENTFKENVQKNAKCAKIGNTNEIRVKNEADETDSSPDHHTSSDSPSSTICGLSSDTSETSSSFRIELGKSESDKKAALRRYQDFQKWMWKECYNPSILCATKYGKKRCKPQVDICDICLNLYCLEDSHCSHCHLTFPSNDGFSVSKHAIQCGDKLPKDICIPESPLPLRTRLLKALLAFIEVSVPPEAFQSIWTEDIRRFWGVKLSRSSSAEELLQILTLFERALNRDFLSSPFATTGDLLGMNTMSESAALTSMDLKSVTVLPWVPRTTSAVSLRLFEFDTSITYVKLEKPDPYQEREARYIKLPSRYAGVKSTKAVEPSYMDCDEFMKVKSAPMKIVRSSRKRARGNHDKGRAKNLSKRTNDSKRDNGLLNFEVTENLSQRLKQQGQGSQGHTGGRGRRTVRKRREENRVDDLLLSDRAAITSSNFSREPSRIMDEDWSDEKPSPIPREAADMSSSSEEDEYDDNTQPMESDDNVEAVEYGQGNWEIGFNGTPNRWNRNLVGMSDEEQHLEASEDDNDNGIEGNGEEEEEEEEEEDGSEADVIMSDDGMANRVVNEESSDSSDSEDYSD 1769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1534 1568 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 21 47 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g04052 1769 Pfam DDT domain 561 616 IPR018501 -
Vivi5g04052 1769 CDD homeodomain 43 98 IPR001356 GO:0003677
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 404 426 - -
Vivi5g04052 1769 SMART testlast3 560 619 IPR018501 -
Vivi5g04052 1769 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 457 479 - -
Vivi5g04052 1769 Gene3D - 25 101 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1656 1670 - -
Vivi5g04052 1769 Coils Coil 396 487 - -
Vivi5g04052 1769 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 22 1769 IPR044977 GO:0006357
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1237 1255 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 433 452 - -
Vivi5g04052 1769 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1126 1198 IPR028941 -
Vivi5g04052 1769 Coils Coil 985 1005 - -
Vivi5g04052 1769 ProSiteProfiles DDT domain profile. 560 619 IPR018501 -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 301 366 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 271 386 - -
Vivi5g04052 1769 SUPERFAMILY Homeodomain-like 29 98 IPR009057 -
Vivi5g04052 1769 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1709 1742 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1630 1647 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1550 1566 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 841 869 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1581 1609 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1625 1769 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1 51 - -
Vivi5g04052 1769 Pfam HB1, ASXL, restriction endonuclease HTH domain 742 810 IPR007759 GO:0006355
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 95 154 - -
Vivi5g04052 1769 SMART HOX_1 40 102 IPR001356 GO:0003677
Vivi5g04052 1769 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 946 989 IPR028942 -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1535 1549 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 368 386 - -
Vivi5g04052 1769 ProSiteProfiles HARE-type HTH domain profile. 742 811 IPR007759 GO:0006355
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1687 1701 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 841 863 - -
Vivi5g04052 1769 MobiDBLite consensus disorder prediction 1223 1255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04052 Vivi-Chr5 136556135 136565923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04052 35 1694 Homeobox Transcription Factor Family AT1G28420 48.428 0.0 1317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi5g04052 WSD 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04052 - - gmx:100818817 2236.84