Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04043 ATGACATGGTGCAATGACTCAAATGATCAAGATAGAGGCATTGAACTAATCACATCCAACCAAAATACTCTTATCACTGATGAATCAAAATCAACCCAAACTCGAACCTTAAGTTGTCCCTCATGTGGTCATAACATTGAATTTCAAGATCAGGGTGGAATCAATGATTTGCCAGGATTACCAGCTGGAGTGAAGTTCGATCCGAATGATCAAGAGATACTGCATCATTTGGAAGCAAAGATTCTGTTTGATGTCCCCAAACTCCATCCTCTTATTGATGAGTTCATACCAACGCTTGAAGGCGAAAACGGAATCTGTTACACTCATCCAGAAAAGTTACCAGGTGTAAGAAAAGATGGACAGATTCGGCACTTCTTTCACAGGCCATCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCAAACAGATGAAGAAGGAAGTGAGACAAGATGGCACAAAACAGGAAAAACCAGACCAGTTTTTATTGGGGGTGCTATCAAAGGTTTCAAAAAGATACTAGTACTCTACACTAACTATGGAAGACAAAAGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATACCATATTGGTAGTAATGAAGAAGAGAAAGATGGTGAATTAGTTGTTTCAAAAGTCTTTTACCAAACTCAACCTCGACAATGTGGTGCTAATAATAGTTCCAACATTATTATAAAGGATGCTTATGAAAATAGAATGATGATGACTCAAGGGAATGTGCAAGATGATAATGAAGCTCCTACTATGGATTACTACAATCCCCCTTTCATAAACTATGACCATGTTGGCCATAACTTGGAACCACAGTTTAATCCAAACTTGGTTATGCAAGGTGATGGTTCTTCTTTTATTCGATTAGCAATGGATGCAAACAAAGCAAGGTTGGACAGAAATTAG 927 0.3819 MTWCNDSNDQDRGIELITSNQNTLITDESKSTQTRTLSCPSCGHNIEFQDQGGINDLPGLPAGVKFDPNDQEILHHLEAKILFDVPKLHPLIDEFIPTLEGENGICYTHPEKLPGVRKDGQIRHFFHRPSKAYTTGTRKRRKVQTDEEGSETRWHKTGKTRPVFIGGAIKGFKKILVLYTNYGRQKKPEKTNWVMHQYHIGSNEEEKDGELVVSKVFYQTQPRQCGANNSSNIIIKDAYENRMMMTQGNVQDDNEAPTMDYYNPPFINYDHVGHNLEPQFNPNLVMQGDGSSFIRLAMDANKARLDRN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04043 308 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 19 241 IPR044799 GO:0003700
Vivi5g04043 308 MobiDBLite consensus disorder prediction 133 155 - -
Vivi5g04043 308 Pfam No apical meristem (NAM) protein 61 200 IPR003441 GO:0003677|GO:0006355
Vivi5g04043 308 ProSiteProfiles NAC domain profile. 60 219 IPR003441 GO:0003677|GO:0006355
Vivi5g04043 308 FunFam NAC domain-containing protein 73 69 223 - -
Vivi5g04043 308 SUPERFAMILY NAC domain 56 219 IPR036093 GO:0003677|GO:0006355
Vivi5g04043 308 Gene3D NAC domain 69 223 IPR036093 GO:0003677|GO:0006355
Vivi5g04043 308 MobiDBLite consensus disorder prediction 139 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04043 Vivi-Chr5 136390154 136392218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04043 1 237 NAC Transcription Factor Family AT4G28500 68.487 3.87e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g04043 NAM 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04043 - - tpra:123916172 504.982