Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04042 ATGAAGAATCTTTCTATAGTATATTGCAAAGTATTGTCAATATTTCCCTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACCGGAATTCGGGCATTATGTTCATTGCATGTGGCCTTGGAGAAAGCCAAGAATGTTCTCCATCATTGCTCAGTGTGCAGTAAACTTTACCTGGCTGTAATTGGGGACTCCGTTCTCCTAAAATTTGAGAAGGTTAAATGTGCTCTTGAAGATAGTCTTAGGCGGGTGGAAGATATTGTTCCACAATCCATTGGATATCAGGTTCAGGAGATTGTGAATGAATTTGCAAGTGTGGAATTTGCACTTGACCCCTTAGAGAAGCAAGTTGGTGATGATCTAATTACATTGCTCCAGCAGGGCAAGAAGTTTGACGAAGATAGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAAGGCTCGGGCTGAGGAGGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAGTACTCCAAGTTATTCAGAAATGAGTTTTCAGACGATACTGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGGTCTAATGAGGACGGTGTTCCCGTTTCTCATAATCAGGCTTTTGGCAGACAGCTTTCAAAACTTAGTTCCTTTAGTTTCACGCCAAATAATAATATGGAGCCGGGGCAGATGGCTCTACCACCTGAGGAGTTAAGGTGTCCAATATATCTGCAGCTTATGTATGATCCAATTATTATTGCTTCGGGGCAAACATATGAAAGAGTTTGCATAGAGAAATGGTTCAGTGATGGGCATAACAACTGCCCAAAGACCCAACAGAATCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGCGAACAAAATGGAATTCCTATTCCCGAAGGCCCTCCTGAGTCTCTTGATCTTAACTATTGGAGATTGGTAATATCAGAGTCTGAGTCTGCAAATTCAAGATCTGTAAATAGTGTCAACTCTTGCAAACTGAAGGGTGTCAGAGTGGTTCCTGTAGAAGAGAGTTGTAACTCAAAGGAATATGGGGAAAATGAAGCTGAAAGTGTATCTGCACAAGAGGAAGACACCGAGCAGTATCTTAATTTTCTGAAAGTCTTGACTGAGGAGAACAATTGGAAGGGGAAATATGAAGTGGTAGATAAGTTAAGGCTGTTGCTGAGGGATGATGAAGAAGCTAGGATTCTTATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCTGTTTTTACAATCGGCTTTACATGAAAGGAATTTGATGGCTCAGGAAAGCGGAGCAATGGCTCTTTTCAACATAGCTGTGAATAATGACAGGTCTGCATTATCATCTGTAGTTTTTATTATTTTGAATCATTATGTAGAAATTCTTTTCATGTTGTTGCAACAAGGTAATTTTCAGTTTCAGCTTTTGAATAATTCTATATTCTCATAA 1560 0.4032 MKNLSIVYCKVLSIFPSLEAARPRSKTGIRALCSLHVALEKAKNVLHHCSVCSKLYLAVIGDSVLLKFEKVKCALEDSLRRVEDIVPQSIGYQVQEIVNEFASVEFALDPLEKQVGDDLITLLQQGKKFDEDSESYELESFHQAATRLGITSSRAALAERRALKKLIDKARAEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDTDSQGSGPCSPTVQGSNEDGVPVSHNQAFGRQLSKLSSFSFTPNNNMEPGQMALPPEELRCPIYLQLMYDPIIIASGQTYERVCIEKWFSDGHNNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVISESESANSRSVNSVNSCKLKGVRVVPVEESCNSKEYGENEAESVSAQEEDTEQYLNFLKVLTEENNWKGKYEVVDKLRLLLRDDEEARILMGANGFVEALVLFLQSALHERNLMAQESGAMALFNIAVNNDRSALSSVVFIILNHYVEILFMLLQQGNFQFQLLNNSIFS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04042 519 MobiDBLite consensus disorder prediction 202 227 - -
Vivi5g04042 519 Coils Coil 153 173 - -
Vivi5g04042 519 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Vivi5g04042 519 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Vivi5g04042 519 Pfam U-box domain 259 328 IPR003613 GO:0004842|GO:0016567
Vivi5g04042 519 PANTHER U BOX DOMAIN-CONTAINING 2 482 - -
Vivi5g04042 519 MobiDBLite consensus disorder prediction 200 227 - -
Vivi5g04042 519 SUPERFAMILY RING/U-box 255 333 - -
Vivi5g04042 519 SUPERFAMILY ARM repeat 405 504 IPR016024 -
Vivi5g04042 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 331 IPR013083 -
Vivi5g04042 519 CDD RING-Ubox_PUB 259 311 IPR045210 -
Vivi5g04042 519 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04042 Vivi-Chr5 136386727 136388678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04042 2 496 U-box Gene Family AT1G24330 66.799 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04042 - - vvo:131605531 995.727