Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04036 ATGAAGTCAACAACACCTCATATGTTTTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCTTGGATTACTCGCAACAAAGACCTTCGCAAGAGCTTGTGGCAAAGGATTTGCACGGCCAGGAGTGGAAGTTTCGACATATCTACAGAGGGCAGCCACGAAGGCATTTGCTTACAACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTTTTCCTCAGGGGTGAGGATGGGGAGTTGAGACTGGGAATCCGTAGGGCAGCTCAATTGAAAAACTGCGGTAACTTTTCATCCCTTTCTGGCCAGCAATTGAATCTTGGAAGCCTTACAGATGTAGTTAAGGCTTTATCTACTAGATGTGCCTTTAGTGTTCACTATAATCCGAGGGTTGGTTCATCTGAGTTTATAGTACCTATCCACAAATTCTTGAAGAGCCGCGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCAGAAGATACTGCAGAGCGAAGAATCACAGGATTAGTTATTGGAATTTCTGATGTGGATCCTGTTAGATGGCCTGGATCGAAATGGAAATGCTTAATGGTAAGGTGGGATGACTTGGAAGCTTCTAGGCTTAACAGGATTTCGCCATGGGAGATTGAGCCCTCTGGCTCAGCTTCCACCACCAATAGCGCAATGTCAGCTAGTTTGAAGAGGACTAAGATTGGATTACCTTCAACAAAGCTAGAATTTCCAGTTCCCGATGGAATTGGAACATCAGACTTTAGGGAATCGCTGCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATGTTAGGTGCTGATACTATTTTCGACAGTATTAGTGCTCGGAGTCACCACCAGTTATCTGAATTACGAAGGTGCTATCCCGGTTCAACCTATCCCGGGATTGCATCAACAGGAAATAGCATCGGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGCGAATCGTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGAGCCTTGTCTGTTGTTGACAAGGCTTCTAGAAATGGTGGCTTTGGACTTTTTGATGTGCCGAGATCCAGAAATGGATGGTATTCTCAAACGAATAACAACTCGCATTTTCATTCATCCGCGTTAATGTACCACCACCAGCAAGGTGCCAATCCAGTTTCAAACTTGGATTACAATAACAAAATAAATCCGGCTATGGAAGATAAACTCTGCCAAAGAGGATCATATCATGCTTCTGAAGACTCAAACTCATTTGCTACACGTTCACATGATTCGATTTCACTACAGATAGGCGGTCAAGAGATGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAACAGGCGGAACCATCTGCTGTCACTTTACCGATAAATCCCGGACCTTCCTCCTTCACAAGACATGTTGAAGAGGATTTCAATCCAAAGCATTCACTCAGGAGCAAGGGTGTAGAAAGTTATTGTACCAAAGTAAGCAATCTTCATCCTGTGCGAAACATGGTAATCGATAGAGTATTCTAG 1665 0.436 MKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCGNFSSLSGQQLNLGSLTDVVKALSTRCAFSVHYNPRVGSSEFIVPIHKFLKSRDYSYSVGMRFRMRFESEDTAERRITGLVIGISDVDPVRWPGSKWKCLMVRWDDLEASRLNRISPWEIEPSGSASTTNSAMSASLKRTKIGLPSTKLEFPVPDGIGTSDFRESLRFQKVLQGQEMLGADTIFDSISARSHHQLSELRRCYPGSTYPGIASTGNSIGIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGRALSVVDKASRNGGFGLFDVPRSRNGWYSQTNNNSHFHSSALMYHHQQGANPVSNLDYNNKINPAMEDKLCQRGSYHASEDSNSFATRSHDSISLQIGGQEMVSTCKSSCRVFGFSLTEGAPIANKQAEPSAVTLPINPGPSSFTRHVEEDFNPKHSLRSKGVESYCTKVSNLHPVRNMVIDRVF 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04036 554 SMART B3_2 9 111 IPR003340 GO:0003677
Vivi5g04036 554 FunFam Auxin response factor 7 111 - -
Vivi5g04036 554 Gene3D - 172 246 - -
Vivi5g04036 554 ProSiteProfiles B3 DNA-binding domain profile. 9 111 IPR003340 GO:0003677
Vivi5g04036 554 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 497 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g04036 554 Pfam Auxin response factor 136 216 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g04036 554 SUPERFAMILY DNA-binding pseudobarrel domain 4 116 IPR015300 -
Vivi5g04036 554 CDD B3_DNA 7 109 IPR003340 GO:0003677
Vivi5g04036 554 FunFam Auxin response factor 172 243 - -
Vivi5g04036 554 Gene3D - 7 111 IPR015300 -
Vivi5g04036 554 Pfam B3 DNA binding domain 9 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04036 Vivi-Chr5 136302991 136307263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04036 8 382 B3 DNA Binding Superfamily AT2G33860 55.585 2.15e-144 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g04036 B3 5.1e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04036 K14486 - gmx:100808119 781.171