Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04035 ATGCAGCAAAAGTTGAGAGGAGGAGAAGTTGATGCTGATGGTGGAGAGGATACTGATGCTGTTATGAAGTCAACAACACCTCATATGTTTTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCTTGGATTACTCGCAACAAAGACCTTCGCAAGAGCTTGTGGCAAAGGATTTGCACGGCCAGGAGTGGAAGTTTCGACATATCTACAGAGGGCAGCCACGAAGGCATTTGCTTACAACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTTTTCCTCAGGGGTGAGGATGGGGAGTTGAGACTGGGAATCCGTAGGGCAGCTCAATTGAAAAACTGCGGTAACTTTTCATCCCTTTCTGGCCAGCAATTGAATCTTGGAAGCCTTACAGATGTAGTTAAGGCTTTATCTACTAGATGTGCCTTTAGTGTTCACTATAATCCGAGGGTTGGTTCATCTGAGTTTATAGTACCTATCCACAAATTCTTGAAGAGCCGCGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCAGAAGATACTGCAGAGCGAAGAATCACAGGATTAGTTATTGGAATTTCTGATGTGGATCCTGTTAGATGGCCTGGATCGAAATGGAAATGCTTAATGGTAAGGTGGGATGACTTGGAAGCTTCTAGGCTTAACAGGATTTCGCCATGGGAGATTGAGCCCTCTGGCTCAGCTTCCACCACCAATAGCGCAATGTCAGCTAGTTTGAAGAGGACTAAGATTGGATTACCTTCAACAAAGCTAGAATTTCCAGTTCCCGATGGAATTGGAACATCAGACTTTAGGGAATCGCTGCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATGTTAGGTGCTGATACTATTTTCGACAGTATTAGTGCTCGGAGTCACCACCAGTTATCTGAATTACGAAGGTGCTATCCCGGTTCAACCTATCCCGGGATTGCATCAACAGGAAATAGCATCGGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGCGAATCGTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGAGCCTTGTCTGTTGTTGACAAGGCTTCTAGAAATGGTGGCTTTGGACTTTTTGATGTGCCGAGATCCAGAAATGGATGGTATTCTCAAACGAATAACAACTCGCATTTTCATTCATCCGCGTTAATGTACCACCACCAGCAAGGTGCCAATCCAGTTTCAAACTTGGATTACAATAACAAAATAAATCCGGCTATGGAAGATAAACTCTGCCAAAGAGGATCATATCATGCTTCTGAAGACTCAAACTCATTTGCTACACGTTCACATGATTCGATTTCACTACAGATAGGCGGTCAAGAGATGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAACAGGCGGAACCATCTGCTGTCACTTTACCGATAAATCCCGGACCTTCCTCCTTCACAAGACATGTTGAAGAGGATTTCAATCCAAAGCATTCACTCAGGAGCAAGGGTGTAGAAAGTTATTGTACCAAAGTAAGCAATCTTCATCCTGTGCGAAACATGGTAATCGATAGAGTATTCTAG 1728 0.4369 MQQKLRGGEVDADGGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCGNFSSLSGQQLNLGSLTDVVKALSTRCAFSVHYNPRVGSSEFIVPIHKFLKSRDYSYSVGMRFRMRFESEDTAERRITGLVIGISDVDPVRWPGSKWKCLMVRWDDLEASRLNRISPWEIEPSGSASTTNSAMSASLKRTKIGLPSTKLEFPVPDGIGTSDFRESLRFQKVLQGQEMLGADTIFDSISARSHHQLSELRRCYPGSTYPGIASTGNSIGIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGRALSVVDKASRNGGFGLFDVPRSRNGWYSQTNNNSHFHSSALMYHHQQGANPVSNLDYNNKINPAMEDKLCQRGSYHASEDSNSFATRSHDSISLQIGGQEMVSTCKSSCRVFGFSLTEGAPIANKQAEPSAVTLPINPGPSSFTRHVEEDFNPKHSLRSKGVESYCTKVSNLHPVRNMVIDRVF 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04035 575 SUPERFAMILY DNA-binding pseudobarrel domain 22 137 IPR015300 -
Vivi5g04035 575 ProSiteProfiles B3 DNA-binding domain profile. 30 132 IPR003340 GO:0003677
Vivi5g04035 575 CDD B3_DNA 28 130 IPR003340 GO:0003677
Vivi5g04035 575 FunFam Auxin response factor 193 264 - -
Vivi5g04035 575 Gene3D - 193 267 - -
Vivi5g04035 575 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 518 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g04035 575 Pfam Auxin response factor 157 237 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g04035 575 SMART B3_2 30 132 IPR003340 GO:0003677
Vivi5g04035 575 FunFam Auxin response factor 28 132 - -
Vivi5g04035 575 Gene3D - 28 132 IPR015300 -
Vivi5g04035 575 Pfam B3 DNA binding domain 30 131 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04035 Vivi-Chr5 136302991 136307263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04035 29 403 B3 DNA Binding Superfamily AT2G33860 55.585 2.50e-144 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g04035 B3 5.4e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04035 K14486 - gmx:100808119 805.053