Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04034 ATGGGTTTGATTGATCTCAACACTACTGAGGAAGATGAAGCACCTTCTTCTGGTTCATCGTCAAATACAAGCCTTGGTTCTGTTTGTTTGGAGCTGTGGCATGCTTGTGCTGGTCCTATGATCTCTTTGCCGAAGAAAGGGAGTGTTGTTGTTTACTTCCCTCAAGGACATTTGGAACATGTTCATGATTTTTCGCTGTCTTTCTCTGAGAATATACATATACCTTCTCATGTGTTCTGTCGGGTTGTTGATGTTAAGCTTCATGCTGAGGAAAGGAACGATGAGGTGTTTTGTCAGGTGTTGTTGGTTCCTGAAAATGAGCAAATGCAGCAAAAGTTGAGAGGAGGAGAAGTTGATGCTGATGGTGGAGAGGATACTGATGCTGTTATGAAGTCAACAACACCTCATATGTTTTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCTTGGATTACTCGCAACAAAGACCTTCGCAAGAGCTTGTGGCAAAGGATTTGCACGGCCAGGAGTGGAAGTTTCGACATATCTACAGAGGGCAGCCACGAAGGCATTTGCTTACAACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTTTTCCTCAGGGGTGAGGATGGGGAGTTGAGACTGGGAATCCGTAGGGCAGCTCAATTGAAAAACTGCGGTAACTTTTCATCCCTTTCTGGCCAGCAATTGAATCTTGGAAGCCTTACAGATGTAGTTAAGGCTTTATCTACTAGATGTGCCTTTAGTGTTCACTATAATCCGAGGGTTGGTTCATCTGAGTTTATAGTACCTATCCACAAATTCTTGAAGAGCCGCGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCAGAAGATACTGCAGAGCGAAGAATCACAGGATTAGTTATTGGAATTTCTGATGTGGATCCTGTTAGATGGCCTGGATCGAAATGGAAATGCTTAATGGTAAGGTGGGATGACTTGGAAGCTTCTAGGCTTAACAGGATTTCGCCATGGGAGATTGAGCCCTCTGGCTCAGCTTCCACCACCAATAGCGCAATGTCAGCTAGTTTGAAGAGGACTAAGATTGGATTACCTTCAACAAAGCTAGAATTTCCAGTTCCCGATGGAATTGGAACATCAGACTTTAGGGAATCGCTGCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATGTTAGGTGCTGATACTATTTTCGACAGTATTAGTGCTCGGAGTCACCACCAGTTATCTGAATTACGAAGGTGCTATCCCGGTTCAACCTATCCCGGGATTGCATCAACAGGAAATAGCATCGGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGCGAATCGTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGAGCCTTGTCTGTTGTTGACAAGGCTTCTAGAAATGGTGGCTTTGGACTTTTTGATGTGCCGAGATCCAGAAATGGATGGTATTCTCAAACGAATAACAACTCGCATTTTCATTCATCCGCGTTAATGTACCACCACCAGCAAGGTGCCAATCCAGTTTCAAACTTGGATTACAATAACAAAATAAATCCGGCTATGGAAGATAAACTCTGCCAAAGAGGATCATATCATGCTTCTGAAGACTCAAACTCATTTGCTACACGTTCACATGATTCGATTTCACTACAGATAGGCGGTCAAGAGATGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAACAGGCGGAACCATCTGCTGTCACTTTACCGATAAATCCCGGACCTTCCTCCTTCACAAGACATGTTGAAGAGGATTTCAATCCAAAGCATTCACTCAGGAGCAAGGGTGTAGAAAGTTATTGTACCAAAGTAAGCAATCTTCATCCTGTGCGAAACATGGTAATCGATAGAGTATTCTAG 2052 0.4347 MGLIDLNTTEEDEAPSSGSSSNTSLGSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHVHDFSLSFSENIHIPSHVFCRVVDVKLHAEERNDEVFCQVLLVPENEQMQQKLRGGEVDADGGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCGNFSSLSGQQLNLGSLTDVVKALSTRCAFSVHYNPRVGSSEFIVPIHKFLKSRDYSYSVGMRFRMRFESEDTAERRITGLVIGISDVDPVRWPGSKWKCLMVRWDDLEASRLNRISPWEIEPSGSASTTNSAMSASLKRTKIGLPSTKLEFPVPDGIGTSDFRESLRFQKVLQGQEMLGADTIFDSISARSHHQLSELRRCYPGSTYPGIASTGNSIGIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGRALSVVDKASRNGGFGLFDVPRSRNGWYSQTNNNSHFHSSALMYHHQQGANPVSNLDYNNKINPAMEDKLCQRGSYHASEDSNSFATRSHDSISLQIGGQEMVSTCKSSCRVFGFSLTEGAPIANKQAEPSAVTLPINPGPSSFTRHVEEDFNPKHSLRSKGVESYCTKVSNLHPVRNMVIDRVF 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04034 683 ProSiteProfiles B3 DNA-binding domain profile. 138 240 IPR003340 GO:0003677
Vivi5g04034 683 FunFam Auxin response factor 136 240 - -
Vivi5g04034 683 Pfam Auxin response factor 265 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g04034 683 SUPERFAMILY DNA-binding pseudobarrel domain 130 245 IPR015300 -
Vivi5g04034 683 SMART B3_2 138 240 IPR003340 GO:0003677
Vivi5g04034 683 CDD B3_DNA 136 238 IPR003340 GO:0003677
Vivi5g04034 683 Gene3D - 301 375 - -
Vivi5g04034 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 626 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g04034 683 Pfam B3 DNA binding domain 138 239 IPR003340 GO:0003677
Vivi5g04034 683 MobiDBLite consensus disorder prediction 1 23 - -
Vivi5g04034 683 FunFam Auxin response factor 301 372 - -
Vivi5g04034 683 Gene3D - 136 240 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04034 Vivi-Chr5 136302991 136307263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04034 24 647 B3 DNA Binding Superfamily AT5G60450 41.768 2.33e-147 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g04034 B3 7e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04034 K14486 - gmx:100808119 963.755