Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04032 ATGGGTTTGATTGATCTCAACACTACTGAGGAAGATGAAGCACCTTCTTCTGGTTCATCGTCAAATACAAGCCTTGGTTCTGTTTGTTTGGAGCTGTGGCATGCTTGTGCTGGTCCTATGATCTCTTTGCCGAAGAAAGGGAGTGTTGTTGTTTACTTCCCTCAAGGACATTTGGAACATGTTCATGATTTTTCGCTGTCTTTCTCTGAGAATATACATATACCTTCTCATGTGTTCTGTCGGGTTGTTGATGTTAAGCTTCATGCTGAGGAAAGGAACGATGAGGTGTTTTGTCAGGTGTTGTTGGTTCCTGAAAATGAGCAAAAGTTGAGAGGAGGAGAAGTTGATGCTGATGGTGGAGAGGATACTGATGCTGTTATGAAGTCAACAACACCTCATATGTTTTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCTTGGATTACTCGCAACAAAGACCTTCGCAAGAGCTTGTGGCAAAGGATTTGCACGGCCAGGAGTGGAAGTTTCGACATATCTACAGAGGGCAGCCACGAAGGCATTTGCTTACAACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTTTTCCTCAGGGGTGAGGATGGGGAGTTGAGACTGGGAATCCGTAGGGCAGCTCAATTGAAAAACTGCGGTAACTTTTCATCCCTTTCTGGCCAGCAATTGAATCTTGGAAGCCTTACAGATGTAGTTAAGGCTTTATCTACTAGATGTGCCTTTAGTGTTCACTATAATCCGAGGGTTGGTTCATCTGAGTTTATAGTACCTATCCACAAATTCTTGAAGAGCCGCGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCAGAAGATACTGCAGAGCGAAGAATCACAGGATTAGTTATTGGAATTTCTGATGTGGATCCTGTTAGATGGCCTGGATCGAAATGGAAATGCTTAATGGTAAGGTGGGATGACTTGGAAGCTTCTAGGCTTAACAGGATTTCGCCATGGGAGATTGAGCCCTCTGGCTCAGCTTCCACCACCAATAGCGCAATGTCAGCTAGTTTGAAGAGGACTAAGATTGGATTACCTTCAACAAAGCTAGAATTTCCAGTTCCCGATGGAATTGGAACATCAGACTTTAGGGAATCGCTGCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATGTTAGGTGCTGATACTATTTTCGACAGTATTAGTGCTCGGAGTCACCACCAGTTATCTGAATTACGAAGGTGCTATCCCGGTTCAACCTATCCCGGGATTGCATCAACAGGAAATAGCATCGGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGCGAATCGTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGAGCCTTGTCTGTTGTTGACAAGGCTTCTAGAAATGGTGGCTTTGGACTTTTTGATGTGCCGAGATCCAGAAATGGATGGTATTCTCAAACGAATAACAACTCGCATTTTCATTCATCCGCGTTAATGTACCACCACCAGCAAGGTGCCAATCCAGTTTCAAACTTGGATTACAATAACAAAATAAATCCGGCTATGGAAGATAAACTCTGCCAAAGAGGATCATATCATGCTTCTGAAGACTCAAACTCATTTGCTACACGTTCACATGATTCGATTTCACTACAGATAGGCGGTCAAGAGATGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAACAGGCGGAACCATCTGCTGTCACTTTACCGATAAATCCCGGACCTTCCTCCTTCACAAGACATGTTGAAGAGGATTTCAATCCAAAGCATTCACTCAGGAGCAAGGGTGTAGAAAGTTATTGTACCAAAGTAAGCAATCTTCATCCTGTGCGAAACATGGTAATCGATAGAGTATTCTAG 2043 0.4347 MGLIDLNTTEEDEAPSSGSSSNTSLGSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHVHDFSLSFSENIHIPSHVFCRVVDVKLHAEERNDEVFCQVLLVPENEQKLRGGEVDADGGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCGNFSSLSGQQLNLGSLTDVVKALSTRCAFSVHYNPRVGSSEFIVPIHKFLKSRDYSYSVGMRFRMRFESEDTAERRITGLVIGISDVDPVRWPGSKWKCLMVRWDDLEASRLNRISPWEIEPSGSASTTNSAMSASLKRTKIGLPSTKLEFPVPDGIGTSDFRESLRFQKVLQGQEMLGADTIFDSISARSHHQLSELRRCYPGSTYPGIASTGNSIGIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGRALSVVDKASRNGGFGLFDVPRSRNGWYSQTNNNSHFHSSALMYHHQQGANPVSNLDYNNKINPAMEDKLCQRGSYHASEDSNSFATRSHDSISLQIGGQEMVSTCKSSCRVFGFSLTEGAPIANKQAEPSAVTLPINPGPSSFTRHVEEDFNPKHSLRSKGVESYCTKVSNLHPVRNMVIDRVF 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04032 680 CDD B3_DNA 133 235 IPR003340 GO:0003677
Vivi5g04032 680 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Vivi5g04032 680 Gene3D - 133 237 IPR015300 -
Vivi5g04032 680 FunFam Auxin response factor 298 369 - -
Vivi5g04032 680 Pfam Auxin response factor 262 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g04032 680 SUPERFAMILY DNA-binding pseudobarrel domain 127 242 IPR015300 -
Vivi5g04032 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 623 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g04032 680 MobiDBLite consensus disorder prediction 1 23 - -
Vivi5g04032 680 Gene3D - 298 372 - -
Vivi5g04032 680 FunFam Auxin response factor 133 237 - -
Vivi5g04032 680 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Vivi5g04032 680 SMART B3_2 135 237 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04032 Vivi-Chr5 136302987 136307263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04032 24 644 B3 DNA Binding Superfamily AT5G60450 41.768 1.12e-146 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g04032 B3 7e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04032 K14486 - gmx:100808119 954.125