Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04018 ATGTCTTCCTCGAACAAACATTGGCCTAGCATGTTCAAGAAATCCAAACCGGACAACCATCAGAATTGGCAGCATGGCATGAACTCATCTCTCTTGTCCGCTGGCTTGCAAACAACTCCTGTTACTTTAGGTGCAGATGTTGATGACAGAAGTCCTGAACCAAAGCCAAGATGGAATCCAAAACCCGAACAAATCCGCATTTTGGAATCCATCTTCAACTCCGGAATGGTGAACCCTCCAAGGGAAGAGATCAAGAAGATCCGTACACAGTTACAAGAGTTTGGCCAAGTTGGTGATGCCAATGTTTTCTACTGGTTCCAAAACCGCAAATCTAGAAGCAAAAACAAGCATAGACACCTCCATAGCAATCCAAGAAACAAAAAGAATTCTGCTGCTGCTGCTCAAATCATCACTGCACCACCTAACTCATCTCCATCATCTTCCTCGGATCATCCCAACGTAAACGCATCGACCAACGAAGCAATAATAGTCAACGTCAACAACATTGGCTTCTCCAATGTTAATGATGGGATAGGAGTGTTGCCTAATTCTCCAAATGTGAACCAAAACCAAACTGCTTATAATTTTCTTCAAACAACACCTGCTGAGACCAATTTTCAACTACCAACACCCCCATCTCAACCATTTTTCTCTTTCTCTATGGAGAATAATAATAATAACAATATCAATGAAGGACTAGCCCAAGTGCTTTACTTATCTGATCAATATTCCAATTCCAATATGGTGAATCAGCCTTTACCTCAACAAAACGTTGCTCTTCCTTTGTTTAATCCTGAGATCATGATGAACTATGGAATTGGAAATTCCCCTATGAATAACCAGCATGATCAAGAGAATAATATTCAAGAGGAAGCAATGAATTTGATGCATATGAATCAACAAGACCCACAACAACTTGGCTTTGGTGTCCCTTCAAGGACTCATGATTCATCTCTTGTTCCTCTTCCTCCTGTTGCCATGAATCCTTCTCTCGCTCCATTCCATATCCCTCAATTTCAAGGTGTTGATAAGCCAAAATGTAAGGTGATAATTAACAGCACTGTAGTCGAAGTTGAAGTGGGTCCCTTCAATGTTGGTGCAAATTTTGGAGATGGTGCCGTTCTCTTTGATTCCTCCGGCCAACGAGTTCCCACCGACGAATGGGGTGTCACCCTCGACTCACTCCAACATGGTGCTTCTTATTACATGGTTTAA 1215 0.4189 MSSSNKHWPSMFKKSKPDNHQNWQHGMNSSLLSAGLQTTPVTLGADVDDRSPEPKPRWNPKPEQIRILESIFNSGMVNPPREEIKKIRTQLQEFGQVGDANVFYWFQNRKSRSKNKHRHLHSNPRNKKNSAAAAQIITAPPNSSPSSSSDHPNVNASTNEAIIVNVNNIGFSNVNDGIGVLPNSPNVNQNQTAYNFLQTTPAETNFQLPTPPSQPFFSFSMENNNNNNINEGLAQVLYLSDQYSNSNMVNQPLPQQNVALPLFNPEIMMNYGIGNSPMNNQHDQENNIQEEAMNLMHMNQQDPQQLGFGVPSRTHDSSLVPLPPVAMNPSLAPFHIPQFQGVDKPKCKVIINSTVVEVEVGPFNVGANFGDGAVLFDSSGQRVPTDEWGVTLDSLQHGASYYMV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04018 404 SMART HOX_1 53 120 IPR001356 GO:0003677
Vivi5g04018 404 FunFam WUSCHEL-related homeobox 11 55 122 - -
Vivi5g04018 404 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Vivi5g04018 404 CDD homeodomain 54 117 IPR001356 GO:0003677
Vivi5g04018 404 Gene3D - 55 120 - -
Vivi5g04018 404 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Vivi5g04018 404 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 404 IPR044557 GO:0003700|GO:0050793
Vivi5g04018 404 MobiDBLite consensus disorder prediction 42 61 - -
Vivi5g04018 404 SUPERFAMILY Homeodomain-like 51 120 IPR009057 -
Vivi5g04018 404 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04018 Vivi-Chr5 136085579 136090834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04018 346 404 Wox Gene Family AT5G45980 50.847 1.51e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi5g04018 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04018 - - mtr:11439786 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04018 5 136085579 136090834 Vivi5g04018 5 136085579 136090834 ECH