Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04014 ATGGCTTTGATACAAACTGAGCTACCCCTCAATGAAAACGATTCTCAAGACATGCTCATATACCAAATTCTTAACGAGGCCAATGAACTCAGCAACACAATGGTTCAACAAATGCACCAAAATGGCCTAGAGCAGATGAAGGACATTAAAAAGAAGAAGTACAGAGGCGTAAGGCGTCGACCGTGGGGGAAATATGCGGCCGAGATTCGTGACTCGGCGCGAAATGGAGCTAGGATATGGCTCGGTACATTCCAAACAGCTGAAGAAGCTGCAATTGCTTATGATAAAGCTGCTTTTAGAATGAGGGGTTCTAAGGCTTTGTTGAATTTCCCACATGAGTTTTCTGCTTCTCTGCAATGGAGTTCGACTTCTAAGCACGGTTTGAGCTCAGAGAAAATCAACAATAAGAACTCTGAGTCAAGTACTAGCAACTCTTGTTCAATTTAA 447 0.4295 MALIQTELPLNENDSQDMLIYQILNEANELSNTMVQQMHQNGLEQMKDIKKKKYRGVRRRPWGKYAAEIRDSARNGARIWLGTFQTAEEAAIAYDKAAFRMRGSKALLNFPHEFSASLQWSSTSKHGLSSEKINNKNSESSTSNSCSI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04014 148 Gene3D AP2/ERF domain 52 112 IPR036955 GO:0003700|GO:0006355
Vivi5g04014 148 SMART rav1_2 53 117 IPR001471 GO:0003700|GO:0006355
Vivi5g04014 148 PANTHER DNA-BINDING DOMAIN 43 136 IPR044808 GO:0003700|GO:0009873
Vivi5g04014 148 MobiDBLite consensus disorder prediction 125 148 - -
Vivi5g04014 148 FunFam Ethylene-responsive transcription factor 2 52 112 - -
Vivi5g04014 148 ProSiteProfiles AP2/ERF domain profile. 53 111 IPR001471 GO:0003700|GO:0006355
Vivi5g04014 148 CDD AP2 52 112 IPR001471 GO:0003700|GO:0006355
Vivi5g04014 148 SUPERFAMILY DNA-binding domain 53 113 IPR016177 GO:0003677
Vivi5g04014 148 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Vivi5g04014 148 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vivi5g04014 148 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04014 Vivi-Chr5 136043517 136044708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04014 7 111 AP2-EREBP Transcription Factor Family AT4G17500 48.529 1.01e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g04014 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04014 K13433 - zju:107411165 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04014 5 136043517 136044708 Vivi5g04014 5 136043517 136044708 ECH