Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04006 ATGCATTTCTCTTTCATTACTCCTCAAGCACTATCAAGAACTTGTTTTCTCACCTATTTATTCATCTCCTTAGTTTTCATCAATGGCTATCAAGCTGATATTACAAGTGGAGACAACAAAGTTATACCGATCGGTGCAATGATCGATATTAACTCTCGAGTCGGGAAAGAACAAAGAATAGCCATGGATATTGCAGCTCAAAATTACAATAACACTTCAAATACCTACAAGCTTGCTCTCCATTTTCAAGAACCTACCAAGAATTCCTTCAGAGCCAATGAAGCTGAAGAGATGATCAAAAAGAAGGTGGAAGTGATTGTAGGGATGCAAACATGGACAGAAGCAGCTTCAGTGGCTGAAGTACTACATGAAGCTGAAGTTGAAATTCCTATCATATCCTTTGTAGCACCTACAGTTACTCCGCCGTTGATGTCGATTCGATGGCCGTCTTTGGTGAGACTAGCTACCAATGGAACAGCATATGTAAAATGCATAGCAGATTTGGTTCATGTTTATGATTGGCATAGTGTGGTTGCCATCTATGAAGATGATGCCTATGGTGGTGATTCCGGGATGCTAGCAGTTCTATCCGAGGCCCTCCAAGAGATTGATTCGACGATTGAATATCGTTTGGCTTTGCCATCGCTTACTTATCTGCGCGATCCAGGAACGTTTATTCGTGACGAGCTGTTTAAGATAACTGAAAACACGCAGTCTCGAGTATTCATTGTATTGCAATCGTCGTTAGAAATGGCGATTCGTTTGTTTAAGGAAGCTTCACAAATGGGACTAGTGGATGGAGATTCGGTTTGGATAATCTCTGAGAGCGTAACGAATTTACTGGATTCTGTCAATAAGTCTAGTATTTCGTATATGCAAGGAGCTTTAGGAATCAAGAACTACTACTCAGAAAACAGCAATGAGTTTAAAGATTTCGAAGCTCGGTTTAGGCGAGCTTTTCGGGACAGGTATCCGGACGAAGATAACCGCGATCCGGGGTATTACGCTTTGCAAGCATATGACAGCATTCAAATGGTTGGACATGCAATAGACAGAATGGCCAGTGGCAATGGTAATCAGAAAAAGACTTTGCTGCAAGAATTAGTCTCGAGCGATTTTCTTGGTTTAAGCGGAAAAATTCAATTTGAATCAGAACAGCTTTTGCAGAATCCTACTTTGAGGATAGTAAATGTAGATGGGAAGAGTTACAGAGAATTAGACTATTGGACTCTAGAAAATGGATTCTTCACTAACATTTCCACAGGAATAGGTAAAAACGGCGGTTCTAGGAACGCGGAGAGTTTAAGCAGTGTAGTAATTTGGCCTGGAAAGTTGCAAGGAGTTCCAAAGGGATGGAACCTTCCTACTAAACAAAAACCATTGAGAATCGCGGTCCCTGGTAGAACTTCATTTTCCAAATTCGTCAAGGTCGATTATGATGAGCAAGGAAATCCAAAATATAGTGGATTTTGCATTGAAATTTTCGATAAGGTTTTGGAGCTTTTGGGTTATGATCTTCCACATGAATACTATCCTATCAATGGAACCTATTCTGATCTGGTTCAACTTGTTTATAACAAGACTTACGACGGTGTTGTTGGCGACATGACCATACTGGCAGAGAGATTGCAATATGTAGATTTTACTGTACCGTATGCAGAATCAGGATTGTCGATGATAGTTACGGAAAAGTCGCAAGAATCAGCATGGATGTTTGTGAAGCCCTTCACATGGCAACTATGGGTGGCAACTGGTGCCATCTTGATTTATACAATGACAGTAGTGTGGTACCTGGAGAAAGATGATAATCAAGAGTTTCAAGGCACTTGGAAAAAGCAAATCAGCACTTCTTTTTTGTTTACTTTCTCCTCGCTATTCTTTGCTCATAGGGAGAAAATGCATAGCAATTTATCTCGCGTAGTGATGGTATCGTGGCTGTTTCTAGTTTTGATTCTTAATTCGAGCTACACTGCGAGTCTTTCTTCAATGCTTACAGTTCAACAACTTCAAACAAATGTCACTGGCATTGAGTGGCTGAAGAAAAACAACATGAAAATTGGTTGTGATGGAGATTCATTCGTTAGGACATACCTTGAGCAAGTCGAAAAATTCAAGCCAGGGAACATCATAAACATTAGCAATGAAAACTATTATGACCCTGTATTCAAAAACAACTCAATTGCCGCTGCGTTTCTCGAACTCCCTTACGAGAAAGTATACATCAGTAAATACTGCAAGGGGTATTCGGCTTCTACGCCTACCACAAGATTCGGAGGACTTGGATTTATGTTCCAGAAAGGCTCCCCCTTGGTCAGAGATGTTTCAAAAGCTATTTTGCAGCTCTTAGAGAAGGGGGAAGTGAGGAAATTAGAAGATATATGGTTGAATCCGGACACATGCTCCAAGAATTTGAACTCCGAGAATACAGAAAGTTTGAAGCTAGGAAGTCTATGGATTCTCTATGTGATTTCTGGTGCAACTTCTACTATTTGTTTTATAGTTTCGGCCATCCATTCTCTAAAATCTAGTCAAACACCAAATGATGACTCGCAAGAAATTAATGGCTGCAGAAATTATGTGAGCAGATGGAAAAGGATGGTTAAGTTAACTAGTAAGATTTATAACAGAAAGCTTAATATAGCAAGCATGGTGAAGCAAGATGTTACTGATTGTCCTTCCAGTACCCTTGATGAGCATCAGCAGGGAATGGCTCTTCAATTACCAGAAATTATAACAGTCTCTGAGCATCAGCAGGGAATGGCTCTTCAATTACCAGAAATCATAACAGTCTCTTCCCCACCAATACAGTAA 2811 0.402 MHFSFITPQALSRTCFLTYLFISLVFINGYQADITSGDNKVIPIGAMIDINSRVGKEQRIAMDIAAQNYNNTSNTYKLALHFQEPTKNSFRANEAEEMIKKKVEVIVGMQTWTEAASVAEVLHEAEVEIPIISFVAPTVTPPLMSIRWPSLVRLATNGTAYVKCIADLVHVYDWHSVVAIYEDDAYGGDSGMLAVLSEALQEIDSTIEYRLALPSLTYLRDPGTFIRDELFKITENTQSRVFIVLQSSLEMAIRLFKEASQMGLVDGDSVWIISESVTNLLDSVNKSSISYMQGALGIKNYYSENSNEFKDFEARFRRAFRDRYPDEDNRDPGYYALQAYDSIQMVGHAIDRMASGNGNQKKTLLQELVSSDFLGLSGKIQFESEQLLQNPTLRIVNVDGKSYRELDYWTLENGFFTNISTGIGKNGGSRNAESLSSVVIWPGKLQGVPKGWNLPTKQKPLRIAVPGRTSFSKFVKVDYDEQGNPKYSGFCIEIFDKVLELLGYDLPHEYYPINGTYSDLVQLVYNKTYDGVVGDMTILAERLQYVDFTVPYAESGLSMIVTEKSQESAWMFVKPFTWQLWVATGAILIYTMTVVWYLEKDDNQEFQGTWKKQISTSFLFTFSSLFFAHREKMHSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLQTNVTGIEWLKKNNMKIGCDGDSFVRTYLEQVEKFKPGNIINISNENYYDPVFKNNSIAAAFLELPYEKVYISKYCKGYSASTPTTRFGGLGFMFQKGSPLVRDVSKAILQLLEKGEVRKLEDIWLNPDTCSKNLNSENTESLKLGSLWILYVISGATSTICFIVSAIHSLKSSQTPNDDSQEINGCRNYVSRWKRMVKLTSKIYNRKLNIASMVKQDVTDCPSSTLDEHQQGMALQLPEIITVSEHQQGMALQLPEIITVSSPPIQ 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04006 936 CDD PBP1_GABAb_receptor_plant 44 419 IPR044440 -
Vivi5g04006 936 Gene3D - 569 705 - -
Vivi5g04006 936 Pfam Ligand-gated ion channel 797 825 IPR001320 GO:0015276|GO:0016020
Vivi5g04006 936 FunFam Glutamate receptor 569 699 - -
Vivi5g04006 936 Gene3D - 713 801 - -
Vivi5g04006 936 Gene3D - 460 568 - -
Vivi5g04006 936 SUPERFAMILY Periplasmic binding protein-like I 39 452 IPR028082 -
Vivi5g04006 936 Gene3D - 336 459 - -
Vivi5g04006 936 Gene3D - 161 331 - -
Vivi5g04006 936 FunFam Glutamate receptor 161 330 - -
Vivi5g04006 936 Gene3D - 37 160 - -
Vivi5g04006 936 SUPERFAMILY Periplasmic binding protein-like II 437 798 - -
Vivi5g04006 936 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 849 IPR015683 -
Vivi5g04006 936 Pfam Bacterial extracellular solute-binding proteins, family 3 482 796 IPR001638 -
Vivi5g04006 936 CDD GluR_Plant 459 795 - -
Vivi5g04006 936 Pfam Receptor family ligand binding region 60 400 IPR001828 -
Vivi5g04006 936 FunFam Glutamate receptor 456 569 - -
Vivi5g04006 936 PIRSF IGluLR_plant 10 920 IPR017103 -
Vivi5g04006 936 SMART GluR_14 460 797 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04006 Vivi-Chr5 135955416 135958886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04006 18 851 Ion Channels AT2G29120 33.142 7.91e-138 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04006 - - gmx:100780320 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04006 5 135955416 135958886 Vivi5g04006 5 135955416 135958886 ECH