Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03971 ATGGCTTCTGCGTCTAATCAATCCTCTTCCACTTCAGAAGAGAACACCATCAACAACACAATTACATTATTAATGAAGGAGAATGATATTGTAAAATCTCAAACTACAAACTCCAAAACCTCAACTTTCAAGCTCTTAGGGGATGCTTCTTTTCGCGGGCCGAAGTTACAAGAACTTGATTTTATCAACCCTACAAAGAACATGGTGGCGGATTCATCTTCATCAAGTTTGATGAATACTAAGTCCAAGAAAAAAGAAAATATTGGAAAGAAATCGTTGAATAATTTCTCATGCAAATTTTGTAAAAATCAATTTTCATCCGCGCAAGCTTTAGGAGGACACCAAAATACTCATAAAAAAGAGCGTGCGCTCGCAAAATATGTCCAAGAGGTAAACAGTGATTTCGATACTCTTCATCATCTTTTTCCTTACCACAATAATTATCCTAGTCTTTCTACAACTCATTATAATGGATTTAGGTTTAGATCATATAATAGACCACTTGGAATTAACATGGAATCTATGATTCAGAAGCCAAGGCCAAGTTATTCATGGATTACACCTCCTTTTAATTTTTGTCCTACTTCTACTTCTACATGGACACCAATGCAAGAGATGAAAACCTTTTCTTTTCTTGATGGATTAAAGAATGAGACTCTTAATGTAAATAATGGAAATAGGGTAACTCCAACTTTGAGGAATTTTCTAAAGAACTTAGAAGTTGGTCTTGGAGAGTCTTCAATAAGTATTGCTACAACGTCAAATTCTATGGAAGAGAATTCAATTGTAGTTGGTACAAGTGATCGTGATAATCATTGTATTAATTTGGAAGATGCCTCTAATGCTGAATCAGTTGGACTTGATTTGTCACTTAAACTTTGA 882 0.3447 MASASNQSSSTSEENTINNTITLLMKENDIVKSQTTNSKTSTFKLLGDASFRGPKLQELDFINPTKNMVADSSSSSLMNTKSKKKENIGKKSLNNFSCKFCKNQFSSAQALGGHQNTHKKERALAKYVQEVNSDFDTLHHLFPYHNNYPSLSTTHYNGFRFRSYNRPLGINMESMIQKPRPSYSWITPPFNFCPTSTSTWTPMQEMKTFSFLDGLKNETLNVNNGNRVTPTLRNFLKNLEVGLGESSISIATTSNSMEENSIVVGTSDRDNHCINLEDASNAESVGLDLSLKL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03971 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Vivi5g03971 293 Pfam C2H2-type zinc finger 96 121 - -
Vivi5g03971 293 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vivi5g03971 293 SUPERFAMILY beta-beta-alpha zinc fingers 95 123 IPR036236 -
Vivi5g03971 293 Gene3D Classic Zinc Finger 71 140 - -
Vivi5g03971 293 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 293 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03971 Vivi-Chr5 135389941 135390822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03971 96 179 C2H2 Transcription Factor Family AT5G10970 40.909 8.80e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03971 - - vvo:131605513 553.903