Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03970 ATGAAACTTCACGAGTGTATCACCGTCCCTCATCTCATGAACACACACATACTCCTTCTCTTGTTCAATTCTCAAGCAACTCACACATTTCTGCAAATGGATCGACCTGCGATTGTTGTTGGGCCGGGAATGGATATGCCGATTATGCATGATAGTGATCGCTATGAACTTGTTCGCGATATCGGTTCGGGGAATTTCGGGGTTGCGAGGCTTATGAGAGATAAACAAACTGAGGAACTTGTTGCTGTTAAGTACATTGAGAGAGGTGAAAAGATTGATGAAAATGTACAAAGAGAAATTATAAATCATAGATCATTGAGGCATCCGAATATTGTCAGGTTTAAGGAGGTTATATTGACTCCAACACATTTAGCTATTGTAATGGAATATGCTTCTGGAGGAGAGTTATTCGAGCGAATATGCAATGCGGGGCGATTTAGTGAAGACGAGGCGCGATTCTTCTTCCAACAACTTATATCCGGTGTTAGCTATTGTCATTCAATGGAAGTATGTCATCGCGACTTGAAGTTGGAAAACACGTTGTTAGACGGTAGTCCAGCGCCACGTTTGAAGATTTGTGATTTCGGATATTCAAAGTCCTCAGTACTACATTCACAACCAAAATCCACAGTTGGCACACCTGCATATATAGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGGGTGACATTATATGTCATGTTGGTGGGTGCATATCCTTTTGAAGATCCAGAGGAACCTAAAAATTTCCGCAAAACAATACATAGGATTTTAAATGTTCAGTATTCAATTCCTGACTATGTTCATATATCTCCTGAATGTCAGCATCTGATTTCAAGGATTTTTGTTGCGGATCCTGCAAAGAGAATAAGTATGCCTGAGATTCGGAACCATGAGTGGTTTATGAAGAACCTTCCGACCGATCTCATGGATGAGAATGGAACAAACGATCAGTTTGAGGAGCCGGATCAACCAACGCAAAGCGTCGAAGAAATCATGCAGATAATCGCGGAGGCGACAGTTCCTGCTGCAGGAACACAGAGCCACAACCAGTATCTTACTGGTAGTTTGGATATTGATGATGACATGGAAGAGGATTTAGACACTGATCCTGACCTTGATATTGATAGCAGTGGAGAAATAGTTTATGCTATGTAA 1188 0.4125 MKLHECITVPHLMNTHILLLLFNSQATHTFLQMDRPAIVVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKQTEELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMEVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECQHLISRIFVADPAKRISMPEIRNHEWFMKNLPTDLMDENGTNDQFEEPDQPTQSVEEIMQIIAEATVPAAGTQSHNQYLTGSLDIDDDMEEDLDTDPDLDIDSSGEIVYAM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03970 395 SMART serkin_6 55 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03970 395 Gene3D Transferase(Phosphotransferase) domain 1 131 319 - -
Vivi5g03970 395 ProSiteProfiles Protein kinase domain profile. 55 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03970 395 FunFam Serine/threonine-protein kinase SRK2E 46 130 - -
Vivi5g03970 395 CDD STKc_SnRK2-3 54 310 - -
Vivi5g03970 395 Gene3D Phosphorylase Kinase; domain 1 33 130 - -
Vivi5g03970 395 PANTHER SERINE/THREONINE KINASE 54 337 - -
Vivi5g03970 395 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Vivi5g03970 395 Pfam Protein kinase domain 55 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03970 395 FunFam Serine/threonine-protein kinase SRK2E 131 319 - -
Vivi5g03970 395 SUPERFAMILY Protein kinase-like (PK-like) 46 346 IPR011009 -
Vivi5g03970 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03970 Vivi-Chr5 135386899 135389359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03970 48 336 CBL-interacting serine-threonine protein kinases AT4G24400 41.584 5.24e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi5g03970 Pkinase 1.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03970 K14498 - qsu:112032862 672.93