Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03968 ATGGCCTCTGTTTCTTCAGAACTGAGTTTAGATTTAACACCCACTTTCGTTCCCAAAACCATCGCTAGTTTCCTCTACAATCTATCCTCAATTCAAACTTCCTCTCATAAACTCTCTAAACTCCACGATTTTCTCTCCAAATTGGAACAAGAACTCCATAAGATCCACGCCTTCAAACGCGAACTACCTCTTTCTATGCTCCTCTTAAACGACGCAATTTTAATTTTGAAGGATGAATTGGAGAAATGCAGACGTGAGAATTGTGTGCCGGTTTTGGAAGAGTTTATTCCGTTGAAGAAAGAGATTGATGATAGTGAGGAAAATCATGATATTGATAGAGATAAGAATAATGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTATGGAACACCACCACAACCACCACCACTACTGATGATAATAATAATAATAATAATGCTTCTGAATCTGATCATAAAGTTCTTAACAATCGAAATAAATTAGAAACCAAGAAAAGAGAAGAGGAAGAAAAATCTGTGACGGTAGCTGAAGATCGTTTTCGATCGTGTAGTAGTAATAGAAATGGAGGGAGTGCTTTTATGCCATTTTCGAGTTATTCTTCTGTTCCTGTTCCTGTGACTACGGTTAAATTGGCAGCACCTAAAGATGAGAAAGATGAAACTGGTTTGAATAATAGGCTGTCTTTTCTGACGCCGGGAGTGAAAGGTTTGAGGGAAGGATTTGATTCGAGGGGGTCGAGAAGTAGTTCTAGCAGGGCTGTTTCTGTTTCGTCTTCTCCTCCTACAGTGCAGCCGAGTTTGAGGGGTGCGCCAGTTCAGCCGCAGCAGATTGCTAGGAAACAGAGGAGATGCTGGTCGCCGGAGTTGCATAGGAGATTTGTTAATGCATTGCAGAAGCTTGGAGGTTCTCAAGCAACTCCAAAGCAAATCAGAGAACTCATGCAAGTTGATGGCCTGACAAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGGCTTCATACACGGAGAGTTCCAGCTGCAAACGGCAACGAGTCTGTTGTAGTTCTTGGAGGTTTATGGATGTCCCAAGAACCATACAATGGATCTTCGAAAGGTAGCAGTTCGGCCTCTGGTTCTCCACAAAGTCCTCTTCATTTAGCTACAGGATCCCGGGGAGGGACATCCCGAACCGAAGGTGATAGCATGGAAGACGACGAGGAAGATGCAAAATCAGAGAGTTATAGCTGGAAAAGTCATATTCACAGACATGGACAAGTTGGTGTATAG 1278 0.4233 MASVSSELSLDLTPTFVPKTIASFLYNLSSIQTSSHKLSKLHDFLSKLEQELHKIHAFKRELPLSMLLLNDAILILKDELEKCRRENCVPVLEEFIPLKKEIDDSEENHDIDRDKNNECRDKKNWMSSVQLWNTTTTTTTTDDNNNNNNASESDHKVLNNRNKLETKKREEEEKSVTVAEDRFRSCSSNRNGGSAFMPFSSYSSVPVPVTTVKLAAPKDEKDETGLNNRLSFLTPGVKGLREGFDSRGSRSSSSRAVSVSSSPPTVQPSLRGAPVQPQQIARKQRRCWSPELHRRFVNALQKLGGSQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAANGNESVVVLGGLWMSQEPYNGSSKGSSSASGSPQSPLHLATGSRGGTSRTEGDSMEDDEEDAKSESYSWKSHIHRHGQVGV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03968 425 Gene3D - 280 341 - -
Vivi5g03968 425 NCBIfam myb-like DNA-binding domain, SHAQKYF class 283 337 IPR006447 GO:0003677
Vivi5g03968 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 280 339 IPR017930 -
Vivi5g03968 425 Pfam Myb-like DNA-binding domain 285 335 IPR001005 -
Vivi5g03968 425 MobiDBLite consensus disorder prediction 237 278 - -
Vivi5g03968 425 MobiDBLite consensus disorder prediction 136 155 - -
Vivi5g03968 425 MobiDBLite consensus disorder prediction 136 177 - -
Vivi5g03968 425 MobiDBLite consensus disorder prediction 363 425 - -
Vivi5g03968 425 MobiDBLite consensus disorder prediction 363 393 - -
Vivi5g03968 425 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 415 IPR044787 GO:0003700|GO:0006355
Vivi5g03968 425 SUPERFAMILY Homeodomain-like 281 340 IPR009057 -
Vivi5g03968 425 MobiDBLite consensus disorder prediction 156 177 - -
Vivi5g03968 425 FunFam Myb family transcription factor 282 339 - -
Vivi5g03968 425 MobiDBLite consensus disorder prediction 246 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03968 Vivi-Chr5 135332419 135335276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03968 1 361 G2-like Transcription Factor Family AT2G03500 40.584 2.26e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g03968 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03968 - - mtr:25493035 569.311